Strain Fitness in Pseudomonas simiae WCS417 around PS417_16340

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16335 and PS417_16340 overlap by 1 nucleotidesPS417_16340 and PS417_16345 overlap by 4 nucleotidesPS417_16345 and PS417_16350 are separated by 73 nucleotides PS417_16335: PS417_16335 - tetraacyldisaccharide 4'-kinase, at 3,574,014 to 3,575,024 _16335 PS417_16340: PS417_16340 - biopolymer transporter ExbD, at 3,575,024 to 3,575,452 _16340 PS417_16345: PS417_16345 - biopolymer transporter ExbB, at 3,575,449 to 3,576,084 _16345 PS417_16350: PS417_16350 - competence protein ComEC, at 3,576,158 to 3,578,371 _16350 Position (kb) 3575 3576Strain fitness (log2 ratio) -2 -1 0 1 2at 3576.118 kb on - strandat 3576.122 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.124 kb on + strandat 3576.125 kb on - strandat 3576.125 kb on - strandat 3576.125 kb on - strandat 3576.125 kb on - strandat 3576.132 kb on + strandat 3576.164 kb on + strandat 3576.262 kb on - strandat 3576.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,576,118 - -0.2
3,576,122 + -0.5
3,576,124 + -0.3
3,576,124 + -0.4
3,576,124 + -1.8
3,576,124 + -0.9
3,576,124 + +0.2
3,576,124 + -0.6
3,576,124 + -0.6
3,576,124 + -0.2
3,576,124 + -1.5
3,576,125 - -0.1
3,576,125 - -0.8
3,576,125 - -0.6
3,576,125 - +1.1
3,576,132 + -0.6
3,576,164 + -0.4
3,576,262 - -0.1
3,576,262 - +2.0

Or see this region's nucleotide sequence