Strain Fitness in Pseudomonas simiae WCS417 around PS417_16060

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16050 and PS417_16055 overlap by 4 nucleotidesPS417_16055 and PS417_16060 are separated by 15 nucleotidesPS417_16060 and PS417_16065 are separated by 46 nucleotides PS417_16050: PS417_16050 - energy transducer TonB, at 3,517,663 to 3,518,436 _16050 PS417_16055: PS417_16055 - biopolymer transporter TolR, at 3,518,433 to 3,518,879 _16055 PS417_16060: PS417_16060 - protein tolQ, at 3,518,895 to 3,519,587 _16060 PS417_16065: PS417_16065 - 3-phytase, at 3,519,634 to 3,521,499 _16065 Position (kb) 3518 3519 3520Strain fitness (log2 ratio) -1 0 1 2at 3518.243 kb on - strand, within PS417_16050at 3518.256 kb on + strand, within PS417_16050at 3518.470 kb on - strandat 3518.542 kb on + strand, within PS417_16055at 3518.542 kb on + strand, within PS417_16055at 3518.543 kb on - strand, within PS417_16055at 3518.975 kb on - strand, within PS417_16060at 3519.178 kb on + strand, within PS417_16060at 3519.178 kb on + strandat 3519.179 kb on - strand, within PS417_16060at 3519.313 kb on + strand, within PS417_16060at 3519.566 kb on + strandat 3519.566 kb on + strandat 3519.567 kb on - strandat 3519.567 kb on - strandat 3519.636 kb on - strandat 3519.881 kb on + strand, within PS417_16065at 3519.881 kb on + strandat 3519.915 kb on - strand, within PS417_16065at 3520.454 kb on + strand, within PS417_16065

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,518,243 - PS417_16050 0.75 -0.1
3,518,256 + PS417_16050 0.77 -1.3
3,518,470 - +2.0
3,518,542 + PS417_16055 0.24 +1.0
3,518,542 + PS417_16055 0.24 -0.3
3,518,543 - PS417_16055 0.25 -0.1
3,518,975 - PS417_16060 0.12 -0.5
3,519,178 + PS417_16060 0.41 +0.1
3,519,178 + +2.2
3,519,179 - PS417_16060 0.41 +0.4
3,519,313 + PS417_16060 0.60 -0.2
3,519,566 + +1.2
3,519,566 + -0.8
3,519,567 - -0.3
3,519,567 - -0.5
3,519,636 - +1.7
3,519,881 + PS417_16065 0.13 -0.2
3,519,881 + +0.2
3,519,915 - PS417_16065 0.15 -0.3
3,520,454 + PS417_16065 0.44 -0.6

Or see this region's nucleotide sequence