Strain Fitness in Pseudomonas simiae WCS417 around PS417_16050

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16045 and PS417_16050 are separated by 205 nucleotidesPS417_16050 and PS417_16055 overlap by 4 nucleotidesPS417_16055 and PS417_16060 are separated by 15 nucleotides PS417_16045: PS417_16045 - acyl-CoA dehydrogenase, at 3,516,279 to 3,517,457 _16045 PS417_16050: PS417_16050 - energy transducer TonB, at 3,517,663 to 3,518,436 _16050 PS417_16055: PS417_16055 - biopolymer transporter TolR, at 3,518,433 to 3,518,879 _16055 PS417_16060: PS417_16060 - protein tolQ, at 3,518,895 to 3,519,587 _16060 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -1 0 1 2at 3516.765 kb on + strand, within PS417_16045at 3517.050 kb on + strand, within PS417_16045at 3517.258 kb on - strand, within PS417_16045at 3517.334 kb on + strand, within PS417_16045at 3517.403 kb on - strandat 3517.452 kb on - strandat 3517.452 kb on - strandat 3517.526 kb on + strandat 3517.559 kb on - strandat 3517.664 kb on + strandat 3517.664 kb on + strandat 3518.243 kb on - strand, within PS417_16050at 3518.256 kb on + strand, within PS417_16050at 3518.470 kb on - strandat 3518.542 kb on + strand, within PS417_16055at 3518.542 kb on + strand, within PS417_16055at 3518.543 kb on - strand, within PS417_16055at 3518.975 kb on - strand, within PS417_16060at 3519.178 kb on + strand, within PS417_16060at 3519.178 kb on + strandat 3519.179 kb on - strand, within PS417_16060at 3519.313 kb on + strand, within PS417_16060

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,516,765 + PS417_16045 0.41 -0.1
3,517,050 + PS417_16045 0.65 -0.6
3,517,258 - PS417_16045 0.83 +0.1
3,517,334 + PS417_16045 0.89 -0.1
3,517,403 - -0.3
3,517,452 - +0.6
3,517,452 - +0.3
3,517,526 + +0.2
3,517,559 - +0.5
3,517,664 + +0.1
3,517,664 + +0.6
3,518,243 - PS417_16050 0.75 -0.1
3,518,256 + PS417_16050 0.77 -1.3
3,518,470 - +2.0
3,518,542 + PS417_16055 0.24 +1.0
3,518,542 + PS417_16055 0.24 -0.3
3,518,543 - PS417_16055 0.25 -0.1
3,518,975 - PS417_16060 0.12 -0.5
3,519,178 + PS417_16060 0.41 +0.1
3,519,178 + +2.2
3,519,179 - PS417_16060 0.41 +0.4
3,519,313 + PS417_16060 0.60 -0.2

Or see this region's nucleotide sequence