Strain Fitness in Pseudomonas simiae WCS417 around PS417_15900

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15895 and PS417_15900 are separated by 98 nucleotidesPS417_15900 and PS417_15905 are separated by 63 nucleotidesPS417_15905 and PS417_15910 overlap by 59 nucleotides PS417_15895: PS417_15895 - iron dicitrate transport regulator FecR, at 3,479,815 to 3,480,765 _15895 PS417_15900: PS417_15900 - TonB-dependent receptor, at 3,480,864 to 3,483,326 _15900 PS417_15905: PS417_15905 - AraC family transcriptional regulator, at 3,483,390 to 3,484,283 _15905 PS417_15910: PS417_15910 - lysine transporter LysE, at 3,484,225 to 3,484,812 _15910 Position (kb) 3480 3481 3482 3483 3484Strain fitness (log2 ratio) -1 0 1at 3479.868 kb on + strandat 3479.869 kb on + strandat 3479.869 kb on + strandat 3479.870 kb on - strandat 3479.870 kb on - strandat 3479.962 kb on + strand, within PS417_15895at 3479.963 kb on - strand, within PS417_15895at 3480.110 kb on - strand, within PS417_15895at 3480.151 kb on + strand, within PS417_15895at 3480.285 kb on - strand, within PS417_15895at 3481.108 kb on - strandat 3481.108 kb on - strandat 3481.182 kb on + strand, within PS417_15900at 3481.522 kb on - strandat 3481.522 kb on - strand, within PS417_15900at 3481.531 kb on + strand, within PS417_15900at 3481.531 kb on + strand, within PS417_15900at 3481.532 kb on - strand, within PS417_15900at 3481.534 kb on - strand, within PS417_15900at 3481.785 kb on + strand, within PS417_15900at 3482.169 kb on + strand, within PS417_15900at 3482.169 kb on + strand, within PS417_15900at 3482.170 kb on - strand, within PS417_15900at 3482.170 kb on - strand, within PS417_15900at 3482.170 kb on - strand, within PS417_15900at 3482.170 kb on - strandat 3482.170 kb on - strand, within PS417_15900at 3482.188 kb on - strand, within PS417_15900at 3482.188 kb on - strand, within PS417_15900at 3482.313 kb on + strand, within PS417_15900at 3482.368 kb on - strand, within PS417_15900at 3482.524 kb on - strandat 3482.598 kb on + strand, within PS417_15900at 3482.626 kb on - strand, within PS417_15900at 3482.634 kb on + strand, within PS417_15900at 3482.634 kb on + strand, within PS417_15900at 3482.647 kb on - strandat 3482.710 kb on - strand, within PS417_15900at 3482.710 kb on - strand, within PS417_15900at 3482.923 kb on - strand, within PS417_15900at 3482.959 kb on - strand, within PS417_15900at 3482.959 kb on - strand, within PS417_15900at 3483.157 kb on - strandat 3483.157 kb on - strandat 3483.157 kb on - strandat 3483.157 kb on - strandat 3483.157 kb on - strandat 3483.159 kb on + strandat 3483.159 kb on + strandat 3483.498 kb on + strand, within PS417_15905at 3483.498 kb on + strand, within PS417_15905at 3483.499 kb on - strand, within PS417_15905at 3483.499 kb on - strand, within PS417_15905at 3483.499 kb on - strand, within PS417_15905at 3483.499 kb on - strand, within PS417_15905at 3483.499 kb on - strand, within PS417_15905at 3483.501 kb on - strand, within PS417_15905at 3483.555 kb on + strand, within PS417_15905at 3483.556 kb on - strand, within PS417_15905at 3483.564 kb on + strand, within PS417_15905at 3483.625 kb on + strand, within PS417_15905at 3483.626 kb on - strand, within PS417_15905at 3483.663 kb on + strand, within PS417_15905at 3483.861 kb on + strand, within PS417_15905at 3483.862 kb on - strandat 3483.945 kb on + strand, within PS417_15905at 3483.986 kb on + strand, within PS417_15905at 3483.986 kb on + strand, within PS417_15905at 3483.986 kb on + strandat 3484.237 kb on + strandat 3484.237 kb on + strandat 3484.238 kb on - strandat 3484.238 kb on - strandat 3484.238 kb on - strandat 3484.238 kb on - strandat 3484.241 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,479,868 + +0.7
3,479,869 + -1.0
3,479,869 + +0.9
3,479,870 - -0.3
3,479,870 - -0.2
3,479,962 + PS417_15895 0.15 +1.0
3,479,963 - PS417_15895 0.16 +0.1
3,480,110 - PS417_15895 0.31 +0.6
3,480,151 + PS417_15895 0.35 +0.2
3,480,285 - PS417_15895 0.49 -0.3
3,481,108 - -0.3
3,481,108 - -1.0
3,481,182 + PS417_15900 0.13 -0.1
3,481,522 - +0.7
3,481,522 - PS417_15900 0.27 +0.2
3,481,531 + PS417_15900 0.27 +0.1
3,481,531 + PS417_15900 0.27 -0.1
3,481,532 - PS417_15900 0.27 +0.6
3,481,534 - PS417_15900 0.27 -0.4
3,481,785 + PS417_15900 0.37 +0.0
3,482,169 + PS417_15900 0.53 -0.3
3,482,169 + PS417_15900 0.53 -0.0
3,482,170 - PS417_15900 0.53 -0.0
3,482,170 - PS417_15900 0.53 +0.5
3,482,170 - PS417_15900 0.53 +0.2
3,482,170 - -0.1
3,482,170 - PS417_15900 0.53 -0.5
3,482,188 - PS417_15900 0.54 -0.9
3,482,188 - PS417_15900 0.54 -0.6
3,482,313 + PS417_15900 0.59 -0.2
3,482,368 - PS417_15900 0.61 +0.6
3,482,524 - -0.3
3,482,598 + PS417_15900 0.70 +0.4
3,482,626 - PS417_15900 0.72 -0.1
3,482,634 + PS417_15900 0.72 -0.5
3,482,634 + PS417_15900 0.72 -0.7
3,482,647 - -0.6
3,482,710 - PS417_15900 0.75 -0.6
3,482,710 - PS417_15900 0.75 -0.2
3,482,923 - PS417_15900 0.84 +0.1
3,482,959 - PS417_15900 0.85 -0.6
3,482,959 - PS417_15900 0.85 -0.2
3,483,157 - -0.4
3,483,157 - -0.3
3,483,157 - -1.5
3,483,157 - -0.3
3,483,157 - +0.7
3,483,159 + +0.0
3,483,159 + +0.3
3,483,498 + PS417_15905 0.12 -0.5
3,483,498 + PS417_15905 0.12 -0.4
3,483,499 - PS417_15905 0.12 -0.3
3,483,499 - PS417_15905 0.12 +1.1
3,483,499 - PS417_15905 0.12 -0.4
3,483,499 - PS417_15905 0.12 -0.1
3,483,499 - PS417_15905 0.12 +0.1
3,483,501 - PS417_15905 0.12 +0.8
3,483,555 + PS417_15905 0.18 +0.5
3,483,556 - PS417_15905 0.19 -0.2
3,483,564 + PS417_15905 0.19 -0.7
3,483,625 + PS417_15905 0.26 -0.0
3,483,626 - PS417_15905 0.26 +0.1
3,483,663 + PS417_15905 0.31 +0.2
3,483,861 + PS417_15905 0.53 +0.1
3,483,862 - +0.9
3,483,945 + PS417_15905 0.62 -0.7
3,483,986 + PS417_15905 0.67 -0.4
3,483,986 + PS417_15905 0.67 -0.1
3,483,986 + +0.2
3,484,237 + -0.2
3,484,237 + +0.1
3,484,238 - -1.2
3,484,238 - +0.4
3,484,238 - -0.1
3,484,238 - +0.0
3,484,241 + -0.4

Or see this region's nucleotide sequence