Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15895 and PS417_15900 are separated by 98 nucleotides PS417_15900 and PS417_15905 are separated by 63 nucleotides PS417_15905 and PS417_15910 overlap by 59 nucleotides
PS417_15895: PS417_15895 - iron dicitrate transport regulator FecR, at 3,479,815 to 3,480,765
_15895
PS417_15900: PS417_15900 - TonB-dependent receptor, at 3,480,864 to 3,483,326
_15900
PS417_15905: PS417_15905 - AraC family transcriptional regulator, at 3,483,390 to 3,484,283
_15905
PS417_15910: PS417_15910 - lysine transporter LysE, at 3,484,225 to 3,484,812
_15910
Position (kb)
3480
3481
3482
3483
3484 Strain fitness (log2 ratio)
-1
0
1 at 3479.868 kb on + strand at 3479.869 kb on + strand at 3479.869 kb on + strand at 3479.870 kb on - strand at 3479.870 kb on - strand at 3479.962 kb on + strand, within PS417_15895 at 3479.963 kb on - strand, within PS417_15895 at 3480.110 kb on - strand, within PS417_15895 at 3480.151 kb on + strand, within PS417_15895 at 3480.285 kb on - strand, within PS417_15895 at 3481.108 kb on - strand at 3481.108 kb on - strand at 3481.182 kb on + strand, within PS417_15900 at 3481.522 kb on - strand at 3481.522 kb on - strand, within PS417_15900 at 3481.531 kb on + strand, within PS417_15900 at 3481.531 kb on + strand, within PS417_15900 at 3481.532 kb on - strand, within PS417_15900 at 3481.534 kb on - strand, within PS417_15900 at 3481.785 kb on + strand, within PS417_15900 at 3482.169 kb on + strand, within PS417_15900 at 3482.169 kb on + strand, within PS417_15900 at 3482.170 kb on - strand, within PS417_15900 at 3482.170 kb on - strand, within PS417_15900 at 3482.170 kb on - strand, within PS417_15900 at 3482.170 kb on - strand at 3482.170 kb on - strand, within PS417_15900 at 3482.188 kb on - strand, within PS417_15900 at 3482.188 kb on - strand, within PS417_15900 at 3482.313 kb on + strand, within PS417_15900 at 3482.368 kb on - strand, within PS417_15900 at 3482.524 kb on - strand at 3482.598 kb on + strand, within PS417_15900 at 3482.626 kb on - strand, within PS417_15900 at 3482.634 kb on + strand, within PS417_15900 at 3482.634 kb on + strand, within PS417_15900 at 3482.647 kb on - strand at 3482.710 kb on - strand, within PS417_15900 at 3482.710 kb on - strand, within PS417_15900 at 3482.923 kb on - strand, within PS417_15900 at 3482.959 kb on - strand, within PS417_15900 at 3482.959 kb on - strand, within PS417_15900 at 3483.157 kb on - strand at 3483.157 kb on - strand at 3483.157 kb on - strand at 3483.157 kb on - strand at 3483.157 kb on - strand at 3483.159 kb on + strand at 3483.159 kb on + strand at 3483.498 kb on + strand, within PS417_15905 at 3483.498 kb on + strand, within PS417_15905 at 3483.499 kb on - strand, within PS417_15905 at 3483.499 kb on - strand, within PS417_15905 at 3483.499 kb on - strand, within PS417_15905 at 3483.499 kb on - strand, within PS417_15905 at 3483.499 kb on - strand, within PS417_15905 at 3483.501 kb on - strand, within PS417_15905 at 3483.555 kb on + strand, within PS417_15905 at 3483.556 kb on - strand, within PS417_15905 at 3483.564 kb on + strand, within PS417_15905 at 3483.625 kb on + strand, within PS417_15905 at 3483.626 kb on - strand, within PS417_15905 at 3483.663 kb on + strand, within PS417_15905 at 3483.861 kb on + strand, within PS417_15905 at 3483.862 kb on - strand at 3483.945 kb on + strand, within PS417_15905 at 3483.986 kb on + strand, within PS417_15905 at 3483.986 kb on + strand, within PS417_15905 at 3483.986 kb on + strand at 3484.237 kb on + strand at 3484.237 kb on + strand at 3484.238 kb on - strand at 3484.238 kb on - strand at 3484.238 kb on - strand at 3484.238 kb on - strand at 3484.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 3,479,868 + +0.7 3,479,869 + -1.0 3,479,869 + +0.9 3,479,870 - -0.3 3,479,870 - -0.2 3,479,962 + PS417_15895 0.15 +1.0 3,479,963 - PS417_15895 0.16 +0.1 3,480,110 - PS417_15895 0.31 +0.6 3,480,151 + PS417_15895 0.35 +0.2 3,480,285 - PS417_15895 0.49 -0.3 3,481,108 - -0.3 3,481,108 - -1.0 3,481,182 + PS417_15900 0.13 -0.1 3,481,522 - +0.7 3,481,522 - PS417_15900 0.27 +0.2 3,481,531 + PS417_15900 0.27 +0.1 3,481,531 + PS417_15900 0.27 -0.1 3,481,532 - PS417_15900 0.27 +0.6 3,481,534 - PS417_15900 0.27 -0.4 3,481,785 + PS417_15900 0.37 +0.0 3,482,169 + PS417_15900 0.53 -0.3 3,482,169 + PS417_15900 0.53 -0.0 3,482,170 - PS417_15900 0.53 -0.0 3,482,170 - PS417_15900 0.53 +0.5 3,482,170 - PS417_15900 0.53 +0.2 3,482,170 - -0.1 3,482,170 - PS417_15900 0.53 -0.5 3,482,188 - PS417_15900 0.54 -0.9 3,482,188 - PS417_15900 0.54 -0.6 3,482,313 + PS417_15900 0.59 -0.2 3,482,368 - PS417_15900 0.61 +0.6 3,482,524 - -0.3 3,482,598 + PS417_15900 0.70 +0.4 3,482,626 - PS417_15900 0.72 -0.1 3,482,634 + PS417_15900 0.72 -0.5 3,482,634 + PS417_15900 0.72 -0.7 3,482,647 - -0.6 3,482,710 - PS417_15900 0.75 -0.6 3,482,710 - PS417_15900 0.75 -0.2 3,482,923 - PS417_15900 0.84 +0.1 3,482,959 - PS417_15900 0.85 -0.6 3,482,959 - PS417_15900 0.85 -0.2 3,483,157 - -0.4 3,483,157 - -0.3 3,483,157 - -1.5 3,483,157 - -0.3 3,483,157 - +0.7 3,483,159 + +0.0 3,483,159 + +0.3 3,483,498 + PS417_15905 0.12 -0.5 3,483,498 + PS417_15905 0.12 -0.4 3,483,499 - PS417_15905 0.12 -0.3 3,483,499 - PS417_15905 0.12 +1.1 3,483,499 - PS417_15905 0.12 -0.4 3,483,499 - PS417_15905 0.12 -0.1 3,483,499 - PS417_15905 0.12 +0.1 3,483,501 - PS417_15905 0.12 +0.8 3,483,555 + PS417_15905 0.18 +0.5 3,483,556 - PS417_15905 0.19 -0.2 3,483,564 + PS417_15905 0.19 -0.7 3,483,625 + PS417_15905 0.26 -0.0 3,483,626 - PS417_15905 0.26 +0.1 3,483,663 + PS417_15905 0.31 +0.2 3,483,861 + PS417_15905 0.53 +0.1 3,483,862 - +0.9 3,483,945 + PS417_15905 0.62 -0.7 3,483,986 + PS417_15905 0.67 -0.4 3,483,986 + PS417_15905 0.67 -0.1 3,483,986 + +0.2 3,484,237 + -0.2 3,484,237 + +0.1 3,484,238 - -1.2 3,484,238 - +0.4 3,484,238 - -0.1 3,484,238 - +0.0 3,484,241 + -0.4
Or see this region's nucleotide sequence