Strain Fitness in Pseudomonas simiae WCS417 around PS417_14965

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14960 and PS417_14965 are separated by 0 nucleotidesPS417_14965 and PS417_14970 are separated by 156 nucleotides PS417_14960: PS417_14960 - ATPase, at 3,270,475 to 3,271,755 _14960 PS417_14965: PS417_14965 - transcriptional regulator, at 3,271,756 to 3,272,463 _14965 PS417_14970: PS417_14970 - MFS transporter, at 3,272,620 to 3,273,819 _14970 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -2 -1 0 1 2at 3270.965 kb on + strand, within PS417_14960at 3270.965 kb on + strand, within PS417_14960at 3270.969 kb on + strand, within PS417_14960at 3270.969 kb on + strand, within PS417_14960at 3271.013 kb on + strand, within PS417_14960at 3271.013 kb on + strand, within PS417_14960at 3271.013 kb on + strand, within PS417_14960at 3271.014 kb on - strand, within PS417_14960at 3271.014 kb on - strand, within PS417_14960at 3271.014 kb on - strand, within PS417_14960at 3271.014 kb on - strand, within PS417_14960at 3271.276 kb on - strand, within PS417_14960at 3271.349 kb on + strand, within PS417_14960at 3271.361 kb on + strand, within PS417_14960at 3271.361 kb on + strand, within PS417_14960at 3271.371 kb on + strand, within PS417_14960at 3271.613 kb on + strandat 3271.613 kb on + strand, within PS417_14960at 3271.614 kb on - strand, within PS417_14960at 3271.683 kb on - strandat 3271.730 kb on + strandat 3271.730 kb on + strandat 3271.743 kb on - strandat 3271.757 kb on + strandat 3271.866 kb on - strand, within PS417_14965at 3271.866 kb on - strand, within PS417_14965at 3271.866 kb on - strand, within PS417_14965at 3272.157 kb on - strand, within PS417_14965at 3272.300 kb on - strand, within PS417_14965at 3272.366 kb on - strand, within PS417_14965at 3272.505 kb on + strandat 3272.505 kb on + strandat 3272.506 kb on - strandat 3272.506 kb on - strandat 3272.583 kb on + strandat 3272.620 kb on - strandat 3272.620 kb on - strandat 3272.773 kb on + strand, within PS417_14970at 3273.004 kb on + strand, within PS417_14970at 3273.005 kb on - strand, within PS417_14970at 3273.023 kb on - strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.373 kb on + strand, within PS417_14970at 3273.374 kb on - strand, within PS417_14970at 3273.374 kb on - strand, within PS417_14970

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,270,965 + PS417_14960 0.38 +0.5
3,270,965 + PS417_14960 0.38 +0.4
3,270,969 + PS417_14960 0.39 -0.4
3,270,969 + PS417_14960 0.39 +0.7
3,271,013 + PS417_14960 0.42 +0.8
3,271,013 + PS417_14960 0.42 -0.2
3,271,013 + PS417_14960 0.42 -0.8
3,271,014 - PS417_14960 0.42 +0.8
3,271,014 - PS417_14960 0.42 -0.4
3,271,014 - PS417_14960 0.42 -1.1
3,271,014 - PS417_14960 0.42 -1.2
3,271,276 - PS417_14960 0.63 -0.0
3,271,349 + PS417_14960 0.68 +0.1
3,271,361 + PS417_14960 0.69 -0.0
3,271,361 + PS417_14960 0.69 -0.4
3,271,371 + PS417_14960 0.70 +1.3
3,271,613 + +0.4
3,271,613 + PS417_14960 0.89 +0.1
3,271,614 - PS417_14960 0.89 -1.1
3,271,683 - +0.8
3,271,730 + -0.8
3,271,730 + +0.5
3,271,743 - -1.4
3,271,757 + -0.6
3,271,866 - PS417_14965 0.16 -2.5
3,271,866 - PS417_14965 0.16 +0.1
3,271,866 - PS417_14965 0.16 -0.9
3,272,157 - PS417_14965 0.57 -0.2
3,272,300 - PS417_14965 0.77 -1.6
3,272,366 - PS417_14965 0.86 -2.3
3,272,505 + -0.4
3,272,505 + +0.5
3,272,506 - +0.1
3,272,506 - +0.8
3,272,583 + +0.7
3,272,620 - -0.1
3,272,620 - +1.0
3,272,773 + PS417_14970 0.13 -0.1
3,273,004 + PS417_14970 0.32 -0.7
3,273,005 - PS417_14970 0.32 +0.5
3,273,023 - PS417_14970 0.34 +0.2
3,273,373 + PS417_14970 0.63 -0.1
3,273,373 + PS417_14970 0.63 -0.4
3,273,373 + PS417_14970 0.63 +2.0
3,273,373 + PS417_14970 0.63 -0.5
3,273,373 + PS417_14970 0.63 +1.0
3,273,373 + PS417_14970 0.63 -0.7
3,273,374 - PS417_14970 0.63 +0.6
3,273,374 - PS417_14970 0.63 -1.2

Or see this region's nucleotide sequence