Strain Fitness in Pseudomonas simiae WCS417 around PS417_14125

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14115 and PS417_14120 are separated by 0 nucleotidesPS417_14120 and PS417_14125 are separated by 5 nucleotidesPS417_14125 and PS417_14130 are separated by 77 nucleotides PS417_14115: PS417_14115 - molybdate ABC transporter substrate-binding protein, at 3,096,733 to 3,097,491 _14115 PS417_14120: PS417_14120 - molybdenum ABC transporter permease, at 3,097,492 to 3,098,172 _14120 PS417_14125: PS417_14125 - molybdenum ABC transporter ATP-binding protein, at 3,098,178 to 3,099,257 _14125 PS417_14130: PS417_14130 - DNA topoisomerase, at 3,099,335 to 3,100,372 _14130 Position (kb) 3098 3099 3100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3097.300 kb on + strand, within PS417_14115at 3097.301 kb on - strand, within PS417_14115at 3097.302 kb on + strand, within PS417_14115at 3097.443 kb on + strandat 3097.468 kb on + strandat 3097.469 kb on - strandat 3097.469 kb on - strandat 3097.489 kb on + strandat 3097.489 kb on + strandat 3097.489 kb on + strandat 3097.685 kb on - strand, within PS417_14120at 3097.685 kb on - strand, within PS417_14120at 3097.714 kb on + strand, within PS417_14120at 3097.796 kb on - strand, within PS417_14120at 3097.796 kb on - strand, within PS417_14120at 3097.796 kb on - strand, within PS417_14120at 3098.047 kb on + strandat 3098.047 kb on + strand, within PS417_14120at 3098.048 kb on - strand, within PS417_14120at 3098.048 kb on - strand, within PS417_14120at 3098.048 kb on - strand, within PS417_14120at 3098.071 kb on + strand, within PS417_14120at 3098.072 kb on - strand, within PS417_14120at 3098.072 kb on - strand, within PS417_14120at 3098.138 kb on - strandat 3098.188 kb on + strandat 3098.189 kb on - strandat 3098.189 kb on - strandat 3098.205 kb on + strandat 3098.340 kb on - strand, within PS417_14125at 3098.415 kb on + strand, within PS417_14125at 3098.697 kb on + strand, within PS417_14125at 3098.739 kb on + strand, within PS417_14125at 3098.740 kb on - strand, within PS417_14125at 3098.884 kb on + strandat 3099.303 kb on - strandat 3099.368 kb on + strandat 3099.368 kb on + strandat 3099.369 kb on - strandat 3099.409 kb on - strandat 3099.425 kb on + strandat 3099.514 kb on - strand, within PS417_14130at 3099.626 kb on + strand, within PS417_14130at 3099.626 kb on + strand, within PS417_14130at 3099.780 kb on - strand, within PS417_14130at 3099.801 kb on - strand, within PS417_14130at 3100.022 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.215 kb on - strand, within PS417_14130

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,097,300 + PS417_14115 0.75 -0.0
3,097,301 - PS417_14115 0.75 -1.3
3,097,302 + PS417_14115 0.75 -1.2
3,097,443 + -1.8
3,097,468 + -1.0
3,097,469 - +0.3
3,097,469 - -0.5
3,097,489 + -0.7
3,097,489 + -2.8
3,097,489 + -0.1
3,097,685 - PS417_14120 0.28 +0.3
3,097,685 - PS417_14120 0.28 -1.3
3,097,714 + PS417_14120 0.33 -0.4
3,097,796 - PS417_14120 0.45 -1.5
3,097,796 - PS417_14120 0.45 -0.3
3,097,796 - PS417_14120 0.45 -0.1
3,098,047 + -0.6
3,098,047 + PS417_14120 0.81 -0.7
3,098,048 - PS417_14120 0.82 -1.6
3,098,048 - PS417_14120 0.82 -1.2
3,098,048 - PS417_14120 0.82 -1.6
3,098,071 + PS417_14120 0.85 +0.4
3,098,072 - PS417_14120 0.85 -0.6
3,098,072 - PS417_14120 0.85 -0.6
3,098,138 - -1.5
3,098,188 + -0.5
3,098,189 - -0.8
3,098,189 - -0.5
3,098,205 + -1.7
3,098,340 - PS417_14125 0.15 -1.2
3,098,415 + PS417_14125 0.22 -1.4
3,098,697 + PS417_14125 0.48 -0.9
3,098,739 + PS417_14125 0.52 -1.2
3,098,740 - PS417_14125 0.52 -1.0
3,098,884 + +2.4
3,099,303 - +0.2
3,099,368 + -0.2
3,099,368 + +0.1
3,099,369 - +0.2
3,099,409 - +0.7
3,099,425 + -1.7
3,099,514 - PS417_14130 0.17 +1.4
3,099,626 + PS417_14130 0.28 -0.3
3,099,626 + PS417_14130 0.28 +0.0
3,099,780 - PS417_14130 0.43 +0.9
3,099,801 - PS417_14130 0.45 +0.3
3,100,022 + PS417_14130 0.66 -0.1
3,100,214 + PS417_14130 0.85 -0.0
3,100,214 + PS417_14130 0.85 +0.4
3,100,214 + PS417_14130 0.85 +0.1
3,100,215 - PS417_14130 0.85 -0.2

Or see this region's nucleotide sequence