Strain Fitness in Pseudomonas simiae WCS417 around PS417_13120

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13110 and PS417_13115 are separated by 141 nucleotidesPS417_13115 and PS417_13120 are separated by 297 nucleotidesPS417_13120 and PS417_13125 are separated by 21 nucleotides PS417_13110: PS417_13110 - methylase, at 2,864,997 to 2,865,809 _13110 PS417_13115: PS417_13115 - hypothetical protein, at 2,865,951 to 2,866,337 _13115 PS417_13120: PS417_13120 - aspartyl beta-hydroxylase, at 2,866,635 to 2,867,534 _13120 PS417_13125: PS417_13125 - ATP-dependent DNA ligase, at 2,867,556 to 2,870,015 _13125 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -2 -1 0 1at 2865.636 kb on + strand, within PS417_13110at 2865.636 kb on + strand, within PS417_13110at 2865.636 kb on + strand, within PS417_13110at 2865.735 kb on + strandat 2865.780 kb on - strandat 2865.879 kb on + strandat 2865.879 kb on + strandat 2865.891 kb on + strandat 2865.891 kb on + strandat 2865.892 kb on - strandat 2865.893 kb on + strandat 2866.086 kb on - strand, within PS417_13115at 2866.118 kb on + strand, within PS417_13115at 2866.324 kb on - strandat 2866.338 kb on - strandat 2866.338 kb on - strandat 2866.338 kb on - strandat 2866.338 kb on - strandat 2866.460 kb on + strandat 2866.460 kb on + strandat 2866.678 kb on - strandat 2866.678 kb on - strandat 2866.678 kb on - strandat 2866.678 kb on - strandat 2866.678 kb on - strandat 2866.678 kb on - strandat 2866.681 kb on + strandat 2866.681 kb on + strandat 2866.682 kb on - strandat 2866.682 kb on - strandat 2866.768 kb on - strand, within PS417_13120at 2866.797 kb on + strand, within PS417_13120at 2866.797 kb on + strand, within PS417_13120at 2866.911 kb on + strand, within PS417_13120at 2866.963 kb on - strand, within PS417_13120at 2867.121 kb on + strand, within PS417_13120at 2867.190 kb on + strand, within PS417_13120at 2867.191 kb on - strand, within PS417_13120at 2867.191 kb on - strand, within PS417_13120at 2867.232 kb on + strand, within PS417_13120at 2867.233 kb on - strand, within PS417_13120at 2867.424 kb on + strand, within PS417_13120at 2867.621 kb on - strandat 2867.803 kb on + strand, within PS417_13125at 2868.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,865,636 + PS417_13110 0.79 -1.3
2,865,636 + PS417_13110 0.79 -0.3
2,865,636 + PS417_13110 0.79 -0.1
2,865,735 + +0.3
2,865,780 - -0.6
2,865,879 + -2.5
2,865,879 + -0.5
2,865,891 + -0.6
2,865,891 + +0.8
2,865,892 - +0.1
2,865,893 + -0.5
2,866,086 - PS417_13115 0.35 -1.5
2,866,118 + PS417_13115 0.43 +0.9
2,866,324 - -0.9
2,866,338 - -0.2
2,866,338 - -0.3
2,866,338 - -0.5
2,866,338 - -0.8
2,866,460 + -0.4
2,866,460 + +0.3
2,866,678 - -0.0
2,866,678 - -0.5
2,866,678 - -1.6
2,866,678 - -1.4
2,866,678 - -0.8
2,866,678 - -0.0
2,866,681 + -0.5
2,866,681 + +0.4
2,866,682 - +0.5
2,866,682 - -2.3
2,866,768 - PS417_13120 0.15 -1.5
2,866,797 + PS417_13120 0.18 -1.2
2,866,797 + PS417_13120 0.18 -0.2
2,866,911 + PS417_13120 0.31 -1.1
2,866,963 - PS417_13120 0.36 +0.7
2,867,121 + PS417_13120 0.54 -1.1
2,867,190 + PS417_13120 0.62 -2.4
2,867,191 - PS417_13120 0.62 -1.1
2,867,191 - PS417_13120 0.62 -1.2
2,867,232 + PS417_13120 0.66 -2.2
2,867,233 - PS417_13120 0.66 -0.3
2,867,424 + PS417_13120 0.88 -0.7
2,867,621 - -0.2
2,867,803 + PS417_13125 0.10 -0.2
2,868,365 - -0.9

Or see this region's nucleotide sequence