Strain Fitness in Pseudomonas simiae WCS417 around PS417_11460

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11455 and PS417_11460 are separated by 41 nucleotidesPS417_11460 and PS417_11465 are separated by 12 nucleotides PS417_11455: PS417_11455 - hypothetical protein, at 2,465,457 to 2,467,010 _11455 PS417_11460: PS417_11460 - divalent metal cation transporter MntH, at 2,467,052 to 2,468,374 _11460 PS417_11465: PS417_11465 - LysR family transcriptional regulator, at 2,468,387 to 2,469,319 _11465 Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2466.109 kb on - strand, within PS417_11455at 2466.214 kb on - strand, within PS417_11455at 2466.543 kb on - strand, within PS417_11455at 2467.011 kb on + strandat 2467.350 kb on + strand, within PS417_11460at 2467.351 kb on - strand, within PS417_11460at 2467.351 kb on - strand, within PS417_11460at 2467.351 kb on - strand, within PS417_11460at 2467.745 kb on + strand, within PS417_11460at 2467.746 kb on - strand, within PS417_11460at 2468.070 kb on - strand, within PS417_11460at 2468.084 kb on - strand, within PS417_11460at 2468.148 kb on + strand, within PS417_11460at 2468.231 kb on + strand, within PS417_11460at 2468.423 kb on + strandat 2468.665 kb on + strand, within PS417_11465at 2468.666 kb on - strand, within PS417_11465at 2468.666 kb on - strandat 2468.666 kb on - strand, within PS417_11465at 2468.667 kb on + strand, within PS417_11465at 2468.667 kb on + strand, within PS417_11465at 2468.668 kb on - strand, within PS417_11465at 2468.668 kb on - strand, within PS417_11465at 2468.794 kb on - strand, within PS417_11465at 2468.913 kb on + strand, within PS417_11465at 2468.933 kb on - strand, within PS417_11465at 2469.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,466,109 - PS417_11455 0.42 +0.9
2,466,214 - PS417_11455 0.49 -1.6
2,466,543 - PS417_11455 0.70 -0.2
2,467,011 + -0.8
2,467,350 + PS417_11460 0.23 -4.6
2,467,351 - PS417_11460 0.23 -1.9
2,467,351 - PS417_11460 0.23 -3.9
2,467,351 - PS417_11460 0.23 -6.5
2,467,745 + PS417_11460 0.52 -2.9
2,467,746 - PS417_11460 0.52 -4.3
2,468,070 - PS417_11460 0.77 -3.8
2,468,084 - PS417_11460 0.78 -2.9
2,468,148 + PS417_11460 0.83 -2.4
2,468,231 + PS417_11460 0.89 -3.2
2,468,423 + +0.5
2,468,665 + PS417_11465 0.30 -0.9
2,468,666 - PS417_11465 0.30 -0.7
2,468,666 - -0.1
2,468,666 - PS417_11465 0.30 +0.2
2,468,667 + PS417_11465 0.30 -0.0
2,468,667 + PS417_11465 0.30 +0.4
2,468,668 - PS417_11465 0.30 -1.2
2,468,668 - PS417_11465 0.30 -0.3
2,468,794 - PS417_11465 0.44 -0.7
2,468,913 + PS417_11465 0.56 -1.3
2,468,933 - PS417_11465 0.59 -0.2
2,469,257 + +0.3

Or see this region's nucleotide sequence