Strain Fitness in Pseudomonas simiae WCS417 around PS417_11345

Experiment: Fraxetin 3 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_11340 and PS417_11345 are separated by 59 nucleotidesPS417_11345 and PS417_11350 are separated by 24 nucleotides PS417_11340: PS417_11340 - prevent-host-death protein, at 2,442,653 to 2,443,246 _11340 PS417_11345: PS417_11345 - membrane protein, at 2,443,306 to 2,444,889 _11345 PS417_11350: PS417_11350 - biopolymer transporter ExbB, at 2,444,914 to 2,446,713 _11350 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -2 -1 0 1at 2442.432 kb on + strandat 2442.473 kb on + strandat 2442.474 kb on - strandat 2442.652 kb on + strandat 2442.653 kb on - strandat 2442.818 kb on + strand, within PS417_11340at 2443.004 kb on + strand, within PS417_11340at 2443.934 kb on - strand, within PS417_11345at 2444.450 kb on - strandat 2444.656 kb on + strand, within PS417_11345at 2444.656 kb on + strand, within PS417_11345at 2444.657 kb on - strand, within PS417_11345at 2444.657 kb on - strand, within PS417_11345at 2445.271 kb on + strand, within PS417_11350at 2445.272 kb on - strand, within PS417_11350at 2445.272 kb on - strand, within PS417_11350at 2445.272 kb on - strand, within PS417_11350at 2445.331 kb on + strand, within PS417_11350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
remove
2,442,432 + -0.2
2,442,473 + +0.2
2,442,474 - -1.7
2,442,652 + -0.0
2,442,653 - -0.3
2,442,818 + PS417_11340 0.28 +0.1
2,443,004 + PS417_11340 0.59 -0.3
2,443,934 - PS417_11345 0.40 -0.6
2,444,450 - -0.1
2,444,656 + PS417_11345 0.85 -0.5
2,444,656 + PS417_11345 0.85 -2.2
2,444,657 - PS417_11345 0.85 -0.7
2,444,657 - PS417_11345 0.85 -0.6
2,445,271 + PS417_11350 0.20 -0.8
2,445,272 - PS417_11350 0.20 +1.1
2,445,272 - PS417_11350 0.20 -0.9
2,445,272 - PS417_11350 0.20 +0.2
2,445,331 + PS417_11350 0.23 -0.3

Or see this region's nucleotide sequence