Strain Fitness in Pseudomonas simiae WCS417 around PS417_10380

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10370 and PS417_10375 overlap by 4 nucleotidesPS417_10375 and PS417_10380 are separated by 5 nucleotidesPS417_10380 and PS417_10385 are separated by 96 nucleotidesPS417_10385 and PS417_10390 are separated by 35 nucleotidesPS417_10390 and PS417_10395 are separated by 79 nucleotides PS417_10370: PS417_10370 - ATPase, at 2,218,617 to 2,219,963 _10370 PS417_10375: PS417_10375 - chemotaxis protein CheY, at 2,219,960 to 2,220,700 _10375 PS417_10380: PS417_10380 - catalase, at 2,220,706 to 2,222,139 _10380 PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652 _10385 PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059 _10390 PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918 _10395 Position (kb) 2220 2221 2222 2223Strain fitness (log2 ratio) -2 -1 0 1 2at 2219.726 kb on - strand, within PS417_10370at 2219.861 kb on - strandat 2220.003 kb on + strandat 2220.003 kb on + strandat 2220.003 kb on + strandat 2220.180 kb on - strand, within PS417_10375at 2220.679 kb on + strandat 2220.679 kb on + strandat 2220.680 kb on - strandat 2220.713 kb on - strandat 2220.746 kb on + strandat 2220.778 kb on - strandat 2221.235 kb on + strand, within PS417_10380at 2221.235 kb on + strand, within PS417_10380at 2221.236 kb on - strand, within PS417_10380at 2221.236 kb on - strand, within PS417_10380at 2221.334 kb on + strand, within PS417_10380at 2221.412 kb on + strand, within PS417_10380at 2221.412 kb on + strand, within PS417_10380at 2221.554 kb on + strand, within PS417_10380at 2221.555 kb on - strand, within PS417_10380at 2221.576 kb on - strand, within PS417_10380at 2221.576 kb on - strand, within PS417_10380at 2222.129 kb on - strandat 2222.215 kb on + strandat 2222.216 kb on - strandat 2222.285 kb on + strand, within PS417_10385at 2222.523 kb on + strand, within PS417_10385at 2222.627 kb on + strandat 2222.690 kb on - strandat 2222.690 kb on - strandat 2222.691 kb on + strandat 2222.691 kb on + strandat 2222.691 kb on + strandat 2222.692 kb on - strandat 2222.736 kb on - strand, within PS417_10390at 2222.763 kb on - strandat 2222.908 kb on + strand, within PS417_10390at 2222.909 kb on - strand, within PS417_10390

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,219,726 - PS417_10370 0.82 -0.5
2,219,861 - -0.5
2,220,003 + +0.3
2,220,003 + +0.3
2,220,003 + +0.8
2,220,180 - PS417_10375 0.30 -0.2
2,220,679 + -1.0
2,220,679 + -0.8
2,220,680 - -0.1
2,220,713 - -0.4
2,220,746 + +0.2
2,220,778 - -0.6
2,221,235 + PS417_10380 0.37 +0.0
2,221,235 + PS417_10380 0.37 -0.3
2,221,236 - PS417_10380 0.37 -0.1
2,221,236 - PS417_10380 0.37 -0.5
2,221,334 + PS417_10380 0.44 -1.0
2,221,412 + PS417_10380 0.49 -0.2
2,221,412 + PS417_10380 0.49 +0.9
2,221,554 + PS417_10380 0.59 -0.9
2,221,555 - PS417_10380 0.59 +1.0
2,221,576 - PS417_10380 0.61 +0.4
2,221,576 - PS417_10380 0.61 -1.2
2,222,129 - -1.0
2,222,215 + -0.2
2,222,216 - -0.2
2,222,285 + PS417_10385 0.12 -0.6
2,222,523 + PS417_10385 0.69 +2.2
2,222,627 + +0.9
2,222,690 - -1.1
2,222,690 - +0.5
2,222,691 + -0.3
2,222,691 + -0.1
2,222,691 + -1.8
2,222,692 - -1.8
2,222,736 - PS417_10390 0.13 +0.5
2,222,763 - +1.4
2,222,908 + PS417_10390 0.59 -0.9
2,222,909 - PS417_10390 0.59 +0.1

Or see this region's nucleotide sequence