Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10370 and PS417_10375 overlap by 4 nucleotides PS417_10375 and PS417_10380 are separated by 5 nucleotides PS417_10380 and PS417_10385 are separated by 96 nucleotides PS417_10385 and PS417_10390 are separated by 35 nucleotides PS417_10390 and PS417_10395 are separated by 79 nucleotides
PS417_10370: PS417_10370 - ATPase, at 2,218,617 to 2,219,963
_10370
PS417_10375: PS417_10375 - chemotaxis protein CheY, at 2,219,960 to 2,220,700
_10375
PS417_10380: PS417_10380 - catalase, at 2,220,706 to 2,222,139
_10380
PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652
_10385
PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059
_10390
PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918
_10395
Position (kb)
2220
2221
2222
2223 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2219.726 kb on - strand, within PS417_10370 at 2219.861 kb on - strand at 2220.003 kb on + strand at 2220.003 kb on + strand at 2220.003 kb on + strand at 2220.180 kb on - strand, within PS417_10375 at 2220.679 kb on + strand at 2220.679 kb on + strand at 2220.680 kb on - strand at 2220.713 kb on - strand at 2220.746 kb on + strand at 2220.778 kb on - strand at 2221.235 kb on + strand, within PS417_10380 at 2221.235 kb on + strand, within PS417_10380 at 2221.236 kb on - strand, within PS417_10380 at 2221.236 kb on - strand, within PS417_10380 at 2221.334 kb on + strand, within PS417_10380 at 2221.412 kb on + strand, within PS417_10380 at 2221.412 kb on + strand, within PS417_10380 at 2221.554 kb on + strand, within PS417_10380 at 2221.555 kb on - strand, within PS417_10380 at 2221.576 kb on - strand, within PS417_10380 at 2221.576 kb on - strand, within PS417_10380 at 2222.129 kb on - strand at 2222.215 kb on + strand at 2222.216 kb on - strand at 2222.285 kb on + strand, within PS417_10385 at 2222.523 kb on + strand, within PS417_10385 at 2222.627 kb on + strand at 2222.690 kb on - strand at 2222.690 kb on - strand at 2222.691 kb on + strand at 2222.691 kb on + strand at 2222.691 kb on + strand at 2222.692 kb on - strand at 2222.736 kb on - strand, within PS417_10390 at 2222.763 kb on - strand at 2222.908 kb on + strand, within PS417_10390 at 2222.909 kb on - strand, within PS417_10390
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 2,219,726 - PS417_10370 0.82 -0.5 2,219,861 - -0.5 2,220,003 + +0.3 2,220,003 + +0.3 2,220,003 + +0.8 2,220,180 - PS417_10375 0.30 -0.2 2,220,679 + -1.0 2,220,679 + -0.8 2,220,680 - -0.1 2,220,713 - -0.4 2,220,746 + +0.2 2,220,778 - -0.6 2,221,235 + PS417_10380 0.37 +0.0 2,221,235 + PS417_10380 0.37 -0.3 2,221,236 - PS417_10380 0.37 -0.1 2,221,236 - PS417_10380 0.37 -0.5 2,221,334 + PS417_10380 0.44 -1.0 2,221,412 + PS417_10380 0.49 -0.2 2,221,412 + PS417_10380 0.49 +0.9 2,221,554 + PS417_10380 0.59 -0.9 2,221,555 - PS417_10380 0.59 +1.0 2,221,576 - PS417_10380 0.61 +0.4 2,221,576 - PS417_10380 0.61 -1.2 2,222,129 - -1.0 2,222,215 + -0.2 2,222,216 - -0.2 2,222,285 + PS417_10385 0.12 -0.6 2,222,523 + PS417_10385 0.69 +2.2 2,222,627 + +0.9 2,222,690 - -1.1 2,222,690 - +0.5 2,222,691 + -0.3 2,222,691 + -0.1 2,222,691 + -1.8 2,222,692 - -1.8 2,222,736 - PS417_10390 0.13 +0.5 2,222,763 - +1.4 2,222,908 + PS417_10390 0.59 -0.9 2,222,909 - PS417_10390 0.59 +0.1
Or see this region's nucleotide sequence