Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09610 and PS417_09615 overlap by 11 nucleotides PS417_09615 and PS417_09620 overlap by 1 nucleotides
PS417_09610: PS417_09610 - beta-xylosidase, at 2,081,428 to 2,082,756
_09610
PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936
_09615
PS417_09620: PS417_09620 - lipopolysaccharide biosynthesis protein, at 2,083,936 to 2,085,927
_09620
Position (kb)
2082
2083
2084 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2081.753 kb on + strand, within PS417_09610 at 2081.910 kb on + strand, within PS417_09610 at 2081.912 kb on + strand, within PS417_09610 at 2081.912 kb on + strand, within PS417_09610 at 2081.913 kb on - strand at 2081.913 kb on - strand, within PS417_09610 at 2081.913 kb on - strand, within PS417_09610 at 2082.394 kb on - strand, within PS417_09610 at 2082.413 kb on - strand, within PS417_09610 at 2082.416 kb on + strand, within PS417_09610 at 2082.655 kb on + strand at 2082.655 kb on + strand at 2082.655 kb on + strand at 2082.656 kb on - strand at 2082.893 kb on + strand, within PS417_09615 at 2082.894 kb on - strand, within PS417_09615 at 2083.204 kb on - strand, within PS417_09615 at 2083.204 kb on - strand, within PS417_09615 at 2083.345 kb on + strand, within PS417_09615 at 2083.357 kb on - strand, within PS417_09615 at 2083.881 kb on + strand at 2083.956 kb on + strand at 2084.349 kb on - strand, within PS417_09620 at 2084.349 kb on - strand, within PS417_09620 at 2084.357 kb on + strand at 2084.358 kb on - strand, within PS417_09620 at 2084.358 kb on - strand, within PS417_09620 at 2084.383 kb on - strand, within PS417_09620 at 2084.487 kb on - strand, within PS417_09620 at 2084.495 kb on + strand, within PS417_09620 at 2084.495 kb on + strand, within PS417_09620 at 2084.495 kb on + strand, within PS417_09620 at 2084.495 kb on + strand, within PS417_09620 at 2084.496 kb on - strand, within PS417_09620 at 2084.496 kb on - strand, within PS417_09620 at 2084.662 kb on - strand, within PS417_09620 at 2084.669 kb on + strand, within PS417_09620 at 2084.669 kb on + strand, within PS417_09620 at 2084.679 kb on - strand, within PS417_09620
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 2,081,753 + PS417_09610 0.24 -0.8 2,081,910 + PS417_09610 0.36 -1.1 2,081,912 + PS417_09610 0.36 -0.6 2,081,912 + PS417_09610 0.36 -1.9 2,081,913 - +3.0 2,081,913 - PS417_09610 0.36 +0.1 2,081,913 - PS417_09610 0.36 -0.3 2,082,394 - PS417_09610 0.73 -1.0 2,082,413 - PS417_09610 0.74 -0.1 2,082,416 + PS417_09610 0.74 +1.7 2,082,655 + -0.8 2,082,655 + -2.4 2,082,655 + -0.6 2,082,656 - +0.0 2,082,893 + PS417_09615 0.12 -3.1 2,082,894 - PS417_09615 0.12 -1.7 2,083,204 - PS417_09615 0.38 -1.4 2,083,204 - PS417_09615 0.38 -0.3 2,083,345 + PS417_09615 0.50 -0.2 2,083,357 - PS417_09615 0.51 -0.3 2,083,881 + -0.7 2,083,956 + -0.0 2,084,349 - PS417_09620 0.21 -2.7 2,084,349 - PS417_09620 0.21 -1.6 2,084,357 + +0.9 2,084,358 - PS417_09620 0.21 -2.1 2,084,358 - PS417_09620 0.21 -0.9 2,084,383 - PS417_09620 0.22 -0.8 2,084,487 - PS417_09620 0.28 -2.6 2,084,495 + PS417_09620 0.28 -2.2 2,084,495 + PS417_09620 0.28 -1.7 2,084,495 + PS417_09620 0.28 -1.3 2,084,495 + PS417_09620 0.28 -2.4 2,084,496 - PS417_09620 0.28 +0.2 2,084,496 - PS417_09620 0.28 -3.0 2,084,662 - PS417_09620 0.36 -1.7 2,084,669 + PS417_09620 0.37 -1.5 2,084,669 + PS417_09620 0.37 -1.8 2,084,679 - PS417_09620 0.37 +0.8
Or see this region's nucleotide sequence