Strain Fitness in Pseudomonas simiae WCS417 around PS417_09615

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09610 and PS417_09615 overlap by 11 nucleotidesPS417_09615 and PS417_09620 overlap by 1 nucleotides PS417_09610: PS417_09610 - beta-xylosidase, at 2,081,428 to 2,082,756 _09610 PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936 _09615 PS417_09620: PS417_09620 - lipopolysaccharide biosynthesis protein, at 2,083,936 to 2,085,927 _09620 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2081.753 kb on + strand, within PS417_09610at 2081.910 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.913 kb on - strandat 2081.913 kb on - strand, within PS417_09610at 2081.913 kb on - strand, within PS417_09610at 2082.394 kb on - strand, within PS417_09610at 2082.413 kb on - strand, within PS417_09610at 2082.416 kb on + strand, within PS417_09610at 2082.655 kb on + strandat 2082.655 kb on + strandat 2082.655 kb on + strandat 2082.656 kb on - strandat 2082.893 kb on + strand, within PS417_09615at 2082.894 kb on - strand, within PS417_09615at 2083.204 kb on - strand, within PS417_09615at 2083.204 kb on - strand, within PS417_09615at 2083.345 kb on + strand, within PS417_09615at 2083.357 kb on - strand, within PS417_09615at 2083.881 kb on + strandat 2083.956 kb on + strandat 2084.349 kb on - strand, within PS417_09620at 2084.349 kb on - strand, within PS417_09620at 2084.357 kb on + strandat 2084.358 kb on - strand, within PS417_09620at 2084.358 kb on - strand, within PS417_09620at 2084.383 kb on - strand, within PS417_09620at 2084.487 kb on - strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.495 kb on + strand, within PS417_09620at 2084.496 kb on - strand, within PS417_09620at 2084.496 kb on - strand, within PS417_09620at 2084.662 kb on - strand, within PS417_09620at 2084.669 kb on + strand, within PS417_09620at 2084.669 kb on + strand, within PS417_09620at 2084.679 kb on - strand, within PS417_09620

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,081,753 + PS417_09610 0.24 -0.8
2,081,910 + PS417_09610 0.36 -1.1
2,081,912 + PS417_09610 0.36 -0.6
2,081,912 + PS417_09610 0.36 -1.9
2,081,913 - +3.0
2,081,913 - PS417_09610 0.36 +0.1
2,081,913 - PS417_09610 0.36 -0.3
2,082,394 - PS417_09610 0.73 -1.0
2,082,413 - PS417_09610 0.74 -0.1
2,082,416 + PS417_09610 0.74 +1.7
2,082,655 + -0.8
2,082,655 + -2.4
2,082,655 + -0.6
2,082,656 - +0.0
2,082,893 + PS417_09615 0.12 -3.1
2,082,894 - PS417_09615 0.12 -1.7
2,083,204 - PS417_09615 0.38 -1.4
2,083,204 - PS417_09615 0.38 -0.3
2,083,345 + PS417_09615 0.50 -0.2
2,083,357 - PS417_09615 0.51 -0.3
2,083,881 + -0.7
2,083,956 + -0.0
2,084,349 - PS417_09620 0.21 -2.7
2,084,349 - PS417_09620 0.21 -1.6
2,084,357 + +0.9
2,084,358 - PS417_09620 0.21 -2.1
2,084,358 - PS417_09620 0.21 -0.9
2,084,383 - PS417_09620 0.22 -0.8
2,084,487 - PS417_09620 0.28 -2.6
2,084,495 + PS417_09620 0.28 -2.2
2,084,495 + PS417_09620 0.28 -1.7
2,084,495 + PS417_09620 0.28 -1.3
2,084,495 + PS417_09620 0.28 -2.4
2,084,496 - PS417_09620 0.28 +0.2
2,084,496 - PS417_09620 0.28 -3.0
2,084,662 - PS417_09620 0.36 -1.7
2,084,669 + PS417_09620 0.37 -1.5
2,084,669 + PS417_09620 0.37 -1.8
2,084,679 - PS417_09620 0.37 +0.8

Or see this region's nucleotide sequence