Strain Fitness in Pseudomonas simiae WCS417 around PS417_09600

Experiment: Fraxetin 3 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09595 and PS417_09600 are separated by 2 nucleotidesPS417_09600 and PS417_09605 overlap by 10 nucleotides PS417_09595: PS417_09595 - membrane protein, at 2,077,678 to 2,079,105 _09595 PS417_09600: PS417_09600 - glycosyl transferase family 1, at 2,079,108 to 2,080,211 _09600 PS417_09605: PS417_09605 - glycosyl transferase, at 2,080,202 to 2,081,419 _09605 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1at 2078.187 kb on - strand, within PS417_09595at 2078.244 kb on - strand, within PS417_09595at 2078.884 kb on - strand, within PS417_09595at 2078.983 kb on + strandat 2078.983 kb on + strandat 2078.984 kb on - strandat 2079.376 kb on + strand, within PS417_09600at 2079.377 kb on - strand, within PS417_09600at 2079.809 kb on - strandat 2079.809 kb on - strand, within PS417_09600at 2079.940 kb on + strand, within PS417_09600at 2079.940 kb on + strand, within PS417_09600at 2079.941 kb on - strand, within PS417_09600at 2080.145 kb on - strandat 2080.203 kb on + strandat 2080.248 kb on + strandat 2080.248 kb on + strandat 2080.401 kb on + strand, within PS417_09605at 2080.974 kb on + strand, within PS417_09605at 2080.975 kb on - strand, within PS417_09605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
remove
2,078,187 - PS417_09595 0.36 -1.0
2,078,244 - PS417_09595 0.40 -0.9
2,078,884 - PS417_09595 0.84 -0.8
2,078,983 + -1.7
2,078,983 + -1.2
2,078,984 - -0.8
2,079,376 + PS417_09600 0.24 -0.8
2,079,377 - PS417_09600 0.24 -2.4
2,079,809 - +0.5
2,079,809 - PS417_09600 0.63 -1.7
2,079,940 + PS417_09600 0.75 -1.3
2,079,940 + PS417_09600 0.75 -1.6
2,079,941 - PS417_09600 0.75 -1.6
2,080,145 - -1.4
2,080,203 + -1.3
2,080,248 + +1.5
2,080,248 + -0.4
2,080,401 + PS417_09605 0.16 -0.3
2,080,974 + PS417_09605 0.63 -0.7
2,080,975 - PS417_09605 0.63 -2.2

Or see this region's nucleotide sequence