Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09145 and PS417_09150 are separated by 24 nucleotides PS417_09150 and PS417_09155 are separated by 2 nucleotides PS417_09155 and PS417_09160 are separated by 190 nucleotides PS417_09160 and PS417_09165 overlap by 4 nucleotides
PS417_09145: PS417_09145 - TonB-dependent receptor, at 1,987,477 to 1,989,759
_09145
PS417_09150: PS417_09150 - energy transducer TonB, at 1,989,784 to 1,990,512
_09150
PS417_09155: PS417_09155 - biopolymer transporter ExbD, at 1,990,515 to 1,990,922
_09155
PS417_09160: PS417_09160 - GNAT family acetyltransferase, at 1,991,113 to 1,991,667
_09160
PS417_09165: PS417_09165 - alkaline phosphatase, at 1,991,664 to 1,993,238
_09165
Position (kb) 1990
1991 Strain fitness (log2 ratio) -1
0
1
2 at 1989.786 kb on - strand at 1989.797 kb on + strand at 1989.797 kb on + strand at 1990.037 kb on + strand, within PS417_09150 at 1990.038 kb on - strand, within PS417_09150 at 1990.038 kb on - strand, within PS417_09150 at 1990.102 kb on - strand at 1990.102 kb on - strand, within PS417_09150 at 1990.504 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.509 kb on - strand at 1990.509 kb on - strand at 1990.523 kb on + strand at 1990.523 kb on + strand at 1990.830 kb on + strand, within PS417_09155 at 1990.990 kb on - strand at 1991.223 kb on + strand, within PS417_09160 at 1991.223 kb on + strand, within PS417_09160 at 1991.249 kb on - strand, within PS417_09160 at 1991.249 kb on - strand, within PS417_09160 at 1991.658 kb on - strand at 1991.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,989,786 - -0.5 1,989,797 + +0.3 1,989,797 + +0.1 1,990,037 + PS417_09150 0.35 +1.6 1,990,038 - PS417_09150 0.35 +1.3 1,990,038 - PS417_09150 0.35 +2.0 1,990,102 - -0.7 1,990,102 - PS417_09150 0.44 -0.9 1,990,504 + -0.5 1,990,508 + -0.8 1,990,508 + -0.4 1,990,508 + -0.0 1,990,508 + +0.0 1,990,509 - +0.1 1,990,509 - +0.1 1,990,523 + -0.2 1,990,523 + -0.2 1,990,830 + PS417_09155 0.77 -1.7 1,990,990 - -0.9 1,991,223 + PS417_09160 0.20 -0.5 1,991,223 + PS417_09160 0.20 +0.0 1,991,249 - PS417_09160 0.25 -0.4 1,991,249 - PS417_09160 0.25 +0.4 1,991,658 - +0.1 1,991,769 + +0.5
Or see this region's nucleotide sequence