Strain Fitness in Pseudomonas simiae WCS417 around PS417_09150

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09145 and PS417_09150 are separated by 24 nucleotidesPS417_09150 and PS417_09155 are separated by 2 nucleotidesPS417_09155 and PS417_09160 are separated by 190 nucleotides PS417_09145: PS417_09145 - TonB-dependent receptor, at 1,987,477 to 1,989,759 _09145 PS417_09150: PS417_09150 - energy transducer TonB, at 1,989,784 to 1,990,512 _09150 PS417_09155: PS417_09155 - biopolymer transporter ExbD, at 1,990,515 to 1,990,922 _09155 PS417_09160: PS417_09160 - GNAT family acetyltransferase, at 1,991,113 to 1,991,667 _09160 Position (kb) 1989 1990 1991Strain fitness (log2 ratio) -1 0 1 2 3at 1988.810 kb on + strand, within PS417_09145at 1988.811 kb on - strand, within PS417_09145at 1988.814 kb on - strand, within PS417_09145at 1988.910 kb on - strand, within PS417_09145at 1988.912 kb on + strand, within PS417_09145at 1988.921 kb on + strand, within PS417_09145at 1988.922 kb on - strandat 1988.944 kb on - strand, within PS417_09145at 1988.987 kb on + strand, within PS417_09145at 1989.011 kb on + strandat 1989.011 kb on + strand, within PS417_09145at 1989.012 kb on + strand, within PS417_09145at 1989.036 kb on - strand, within PS417_09145at 1989.398 kb on + strand, within PS417_09145at 1989.398 kb on + strand, within PS417_09145at 1989.399 kb on - strand, within PS417_09145at 1989.786 kb on - strandat 1989.797 kb on + strandat 1989.797 kb on + strandat 1990.037 kb on + strand, within PS417_09150at 1990.038 kb on - strand, within PS417_09150at 1990.038 kb on - strand, within PS417_09150at 1990.102 kb on - strandat 1990.102 kb on - strand, within PS417_09150at 1990.504 kb on + strandat 1990.508 kb on + strandat 1990.508 kb on + strandat 1990.508 kb on + strandat 1990.508 kb on + strandat 1990.509 kb on - strandat 1990.509 kb on - strandat 1990.523 kb on + strandat 1990.523 kb on + strandat 1990.830 kb on + strand, within PS417_09155at 1990.990 kb on - strandat 1991.223 kb on + strand, within PS417_09160at 1991.223 kb on + strand, within PS417_09160at 1991.249 kb on - strand, within PS417_09160at 1991.249 kb on - strand, within PS417_09160

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,988,810 + PS417_09145 0.58 +0.3
1,988,811 - PS417_09145 0.58 +0.8
1,988,814 - PS417_09145 0.59 +0.4
1,988,910 - PS417_09145 0.63 +0.4
1,988,912 + PS417_09145 0.63 -0.3
1,988,921 + PS417_09145 0.63 -1.6
1,988,922 - +3.3
1,988,944 - PS417_09145 0.64 +0.3
1,988,987 + PS417_09145 0.66 -0.6
1,989,011 + +2.0
1,989,011 + PS417_09145 0.67 +0.6
1,989,012 + PS417_09145 0.67 +0.5
1,989,036 - PS417_09145 0.68 +0.1
1,989,398 + PS417_09145 0.84 -1.2
1,989,398 + PS417_09145 0.84 +0.1
1,989,399 - PS417_09145 0.84 +0.7
1,989,786 - -0.5
1,989,797 + +0.3
1,989,797 + +0.1
1,990,037 + PS417_09150 0.35 +1.6
1,990,038 - PS417_09150 0.35 +1.3
1,990,038 - PS417_09150 0.35 +2.0
1,990,102 - -0.7
1,990,102 - PS417_09150 0.44 -0.9
1,990,504 + -0.5
1,990,508 + -0.8
1,990,508 + -0.4
1,990,508 + -0.0
1,990,508 + +0.0
1,990,509 - +0.1
1,990,509 - +0.1
1,990,523 + -0.2
1,990,523 + -0.2
1,990,830 + PS417_09155 0.77 -1.7
1,990,990 - -0.9
1,991,223 + PS417_09160 0.20 -0.5
1,991,223 + PS417_09160 0.20 +0.0
1,991,249 - PS417_09160 0.25 -0.4
1,991,249 - PS417_09160 0.25 +0.4

Or see this region's nucleotide sequence