Strain Fitness in Pseudomonas simiae WCS417 around PS417_09140

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09135 and PS417_09140 are separated by 53 nucleotidesPS417_09140 and PS417_09145 are separated by 17 nucleotides PS417_09135: PS417_09135 - phospholipase, at 1,985,541 to 1,986,758 _09135 PS417_09140: PS417_09140 - biopolymer transporter ExbB, at 1,986,812 to 1,987,459 _09140 PS417_09145: PS417_09145 - TonB-dependent receptor, at 1,987,477 to 1,989,759 _09145 Position (kb) 1986 1987 1988Strain fitness (log2 ratio) -2 -1 0 1 2at 1985.858 kb on - strand, within PS417_09135at 1985.959 kb on + strand, within PS417_09135at 1985.983 kb on + strand, within PS417_09135at 1986.112 kb on + strand, within PS417_09135at 1986.112 kb on + strand, within PS417_09135at 1986.113 kb on - strand, within PS417_09135at 1986.225 kb on + strand, within PS417_09135at 1986.226 kb on - strand, within PS417_09135at 1986.335 kb on - strand, within PS417_09135at 1986.335 kb on - strand, within PS417_09135at 1986.370 kb on + strand, within PS417_09135at 1986.758 kb on + strandat 1986.759 kb on - strandat 1987.176 kb on + strand, within PS417_09140at 1987.176 kb on + strand, within PS417_09140at 1987.177 kb on - strand, within PS417_09140at 1987.355 kb on + strand, within PS417_09140at 1987.355 kb on + strand, within PS417_09140at 1987.356 kb on - strand, within PS417_09140at 1987.416 kb on + strandat 1987.416 kb on + strandat 1987.417 kb on - strandat 1987.417 kb on - strandat 1987.417 kb on - strandat 1987.417 kb on - strandat 1987.425 kb on + strandat 1987.425 kb on + strandat 1987.425 kb on + strandat 1987.478 kb on + strandat 1987.529 kb on + strandat 1987.530 kb on - strandat 1987.530 kb on - strandat 1987.587 kb on - strandat 1987.677 kb on - strandat 1987.743 kb on - strand, within PS417_09145at 1987.757 kb on + strand, within PS417_09145at 1987.758 kb on - strand, within PS417_09145at 1987.883 kb on + strand, within PS417_09145at 1987.884 kb on - strand, within PS417_09145at 1987.925 kb on + strand, within PS417_09145at 1987.925 kb on + strand, within PS417_09145at 1987.925 kb on + strand, within PS417_09145at 1987.925 kb on + strandat 1987.926 kb on - strand, within PS417_09145at 1987.934 kb on + strand, within PS417_09145at 1987.934 kb on + strand, within PS417_09145at 1987.935 kb on - strand, within PS417_09145at 1987.937 kb on + strandat 1987.938 kb on - strand, within PS417_09145at 1987.938 kb on - strand, within PS417_09145at 1988.186 kb on + strand, within PS417_09145at 1988.222 kb on + strand, within PS417_09145

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,985,858 - PS417_09135 0.26 -0.0
1,985,959 + PS417_09135 0.34 +0.1
1,985,983 + PS417_09135 0.36 -0.1
1,986,112 + PS417_09135 0.47 -1.8
1,986,112 + PS417_09135 0.47 +1.4
1,986,113 - PS417_09135 0.47 +1.0
1,986,225 + PS417_09135 0.56 +1.6
1,986,226 - PS417_09135 0.56 -0.6
1,986,335 - PS417_09135 0.65 -0.3
1,986,335 - PS417_09135 0.65 -0.6
1,986,370 + PS417_09135 0.68 -0.5
1,986,758 + -0.0
1,986,759 - -0.1
1,987,176 + PS417_09140 0.56 +0.8
1,987,176 + PS417_09140 0.56 -0.6
1,987,177 - PS417_09140 0.56 +0.4
1,987,355 + PS417_09140 0.84 -1.1
1,987,355 + PS417_09140 0.84 -0.0
1,987,356 - PS417_09140 0.84 -0.3
1,987,416 + -0.2
1,987,416 + -0.3
1,987,417 - -0.7
1,987,417 - +0.1
1,987,417 - -0.1
1,987,417 - -0.1
1,987,425 + -0.1
1,987,425 + -0.7
1,987,425 + -0.5
1,987,478 + +0.4
1,987,529 + +0.0
1,987,530 - +1.9
1,987,530 - -1.2
1,987,587 - -1.1
1,987,677 - +0.1
1,987,743 - PS417_09145 0.12 -1.1
1,987,757 + PS417_09145 0.12 +0.0
1,987,758 - PS417_09145 0.12 -0.2
1,987,883 + PS417_09145 0.18 -0.6
1,987,884 - PS417_09145 0.18 -0.5
1,987,925 + PS417_09145 0.20 +0.5
1,987,925 + PS417_09145 0.20 +0.2
1,987,925 + PS417_09145 0.20 +0.9
1,987,925 + -0.9
1,987,926 - PS417_09145 0.20 -0.2
1,987,934 + PS417_09145 0.20 +0.2
1,987,934 + PS417_09145 0.20 +0.1
1,987,935 - PS417_09145 0.20 -0.8
1,987,937 + -0.5
1,987,938 - PS417_09145 0.20 -0.3
1,987,938 - PS417_09145 0.20 +0.5
1,988,186 + PS417_09145 0.31 +0.1
1,988,222 + PS417_09145 0.33 -0.6

Or see this region's nucleotide sequence