Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08485 and PS417_08490 are separated by 28 nucleotides PS417_08490 and PS417_08495 are separated by 175 nucleotides PS417_08495 and PS417_08500 are separated by 80 nucleotides
PS417_08485: PS417_08485 - alpha/beta hydrolase, at 1,855,154 to 1,856,170
_08485
PS417_08490: PS417_08490 - organic hydroperoxide resistance protein, at 1,856,199 to 1,856,618
_08490
PS417_08495: PS417_08495 - MarR family transcriptional regulator, at 1,856,794 to 1,857,246
_08495
PS417_08500: PS417_08500 - LysR family transcriptional regulator, at 1,857,327 to 1,858,277
_08500
Position (kb)
1856
1857 Strain fitness (log2 ratio)
-2
-1
0
1 at 1855.263 kb on + strand, within PS417_08485 at 1855.264 kb on - strand, within PS417_08485 at 1855.268 kb on + strand, within PS417_08485 at 1855.311 kb on + strand, within PS417_08485 at 1855.312 kb on - strand, within PS417_08485 at 1855.446 kb on + strand, within PS417_08485 at 1855.447 kb on - strand, within PS417_08485 at 1855.447 kb on - strand, within PS417_08485 at 1855.447 kb on - strand, within PS417_08485 at 1855.447 kb on - strand, within PS417_08485 at 1855.447 kb on - strand, within PS417_08485 at 1855.509 kb on + strand, within PS417_08485 at 1855.509 kb on + strand, within PS417_08485 at 1855.510 kb on - strand, within PS417_08485 at 1855.510 kb on - strand, within PS417_08485 at 1855.510 kb on - strand, within PS417_08485 at 1855.755 kb on + strand, within PS417_08485 at 1855.755 kb on + strand, within PS417_08485 at 1855.756 kb on - strand, within PS417_08485 at 1856.220 kb on + strand at 1856.220 kb on + strand at 1856.221 kb on - strand at 1856.221 kb on - strand at 1856.596 kb on - strand at 1856.603 kb on + strand at 1856.603 kb on + strand at 1856.605 kb on + strand at 1856.605 kb on + strand at 1856.605 kb on + strand at 1857.153 kb on - strand, within PS417_08495 at 1857.439 kb on - strand at 1857.445 kb on + strand, within PS417_08500 at 1857.446 kb on - strand at 1857.446 kb on - strand, within PS417_08500 at 1857.446 kb on - strand, within PS417_08500 at 1857.446 kb on - strand, within PS417_08500
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,855,263 + PS417_08485 0.11 -0.6 1,855,264 - PS417_08485 0.11 -0.6 1,855,268 + PS417_08485 0.11 +0.5 1,855,311 + PS417_08485 0.15 -0.0 1,855,312 - PS417_08485 0.16 -0.4 1,855,446 + PS417_08485 0.29 -0.7 1,855,447 - PS417_08485 0.29 -0.2 1,855,447 - PS417_08485 0.29 -0.2 1,855,447 - PS417_08485 0.29 +1.0 1,855,447 - PS417_08485 0.29 -0.6 1,855,447 - PS417_08485 0.29 -0.2 1,855,509 + PS417_08485 0.35 -0.2 1,855,509 + PS417_08485 0.35 -0.5 1,855,510 - PS417_08485 0.35 +0.0 1,855,510 - PS417_08485 0.35 +0.2 1,855,510 - PS417_08485 0.35 -1.7 1,855,755 + PS417_08485 0.59 -0.1 1,855,755 + PS417_08485 0.59 -0.7 1,855,756 - PS417_08485 0.59 -0.1 1,856,220 + -1.0 1,856,220 + -0.4 1,856,221 - -2.3 1,856,221 - -0.0 1,856,596 - +0.7 1,856,603 + -0.2 1,856,603 + +1.2 1,856,605 + +0.1 1,856,605 + -1.2 1,856,605 + -0.7 1,857,153 - PS417_08495 0.79 -1.0 1,857,439 - -0.3 1,857,445 + PS417_08500 0.12 +0.4 1,857,446 - -1.3 1,857,446 - PS417_08500 0.13 +0.1 1,857,446 - PS417_08500 0.13 +0.2 1,857,446 - PS417_08500 0.13 -0.3
Or see this region's nucleotide sequence