Strain Fitness in Pseudomonas simiae WCS417 around PS417_08490

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08485 and PS417_08490 are separated by 28 nucleotidesPS417_08490 and PS417_08495 are separated by 175 nucleotidesPS417_08495 and PS417_08500 are separated by 80 nucleotides PS417_08485: PS417_08485 - alpha/beta hydrolase, at 1,855,154 to 1,856,170 _08485 PS417_08490: PS417_08490 - organic hydroperoxide resistance protein, at 1,856,199 to 1,856,618 _08490 PS417_08495: PS417_08495 - MarR family transcriptional regulator, at 1,856,794 to 1,857,246 _08495 PS417_08500: PS417_08500 - LysR family transcriptional regulator, at 1,857,327 to 1,858,277 _08500 Position (kb) 1856 1857Strain fitness (log2 ratio) -2 -1 0 1at 1855.263 kb on + strand, within PS417_08485at 1855.264 kb on - strand, within PS417_08485at 1855.268 kb on + strand, within PS417_08485at 1855.311 kb on + strand, within PS417_08485at 1855.312 kb on - strand, within PS417_08485at 1855.446 kb on + strand, within PS417_08485at 1855.447 kb on - strand, within PS417_08485at 1855.447 kb on - strand, within PS417_08485at 1855.447 kb on - strand, within PS417_08485at 1855.447 kb on - strand, within PS417_08485at 1855.447 kb on - strand, within PS417_08485at 1855.509 kb on + strand, within PS417_08485at 1855.509 kb on + strand, within PS417_08485at 1855.510 kb on - strand, within PS417_08485at 1855.510 kb on - strand, within PS417_08485at 1855.510 kb on - strand, within PS417_08485at 1855.755 kb on + strand, within PS417_08485at 1855.755 kb on + strand, within PS417_08485at 1855.756 kb on - strand, within PS417_08485at 1856.220 kb on + strandat 1856.220 kb on + strandat 1856.221 kb on - strandat 1856.221 kb on - strandat 1856.596 kb on - strandat 1856.603 kb on + strandat 1856.603 kb on + strandat 1856.605 kb on + strandat 1856.605 kb on + strandat 1856.605 kb on + strandat 1857.153 kb on - strand, within PS417_08495at 1857.439 kb on - strandat 1857.445 kb on + strand, within PS417_08500at 1857.446 kb on - strandat 1857.446 kb on - strand, within PS417_08500at 1857.446 kb on - strand, within PS417_08500at 1857.446 kb on - strand, within PS417_08500

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,855,263 + PS417_08485 0.11 -0.6
1,855,264 - PS417_08485 0.11 -0.6
1,855,268 + PS417_08485 0.11 +0.5
1,855,311 + PS417_08485 0.15 -0.0
1,855,312 - PS417_08485 0.16 -0.4
1,855,446 + PS417_08485 0.29 -0.7
1,855,447 - PS417_08485 0.29 -0.2
1,855,447 - PS417_08485 0.29 -0.2
1,855,447 - PS417_08485 0.29 +1.0
1,855,447 - PS417_08485 0.29 -0.6
1,855,447 - PS417_08485 0.29 -0.2
1,855,509 + PS417_08485 0.35 -0.2
1,855,509 + PS417_08485 0.35 -0.5
1,855,510 - PS417_08485 0.35 +0.0
1,855,510 - PS417_08485 0.35 +0.2
1,855,510 - PS417_08485 0.35 -1.7
1,855,755 + PS417_08485 0.59 -0.1
1,855,755 + PS417_08485 0.59 -0.7
1,855,756 - PS417_08485 0.59 -0.1
1,856,220 + -1.0
1,856,220 + -0.4
1,856,221 - -2.3
1,856,221 - -0.0
1,856,596 - +0.7
1,856,603 + -0.2
1,856,603 + +1.2
1,856,605 + +0.1
1,856,605 + -1.2
1,856,605 + -0.7
1,857,153 - PS417_08495 0.79 -1.0
1,857,439 - -0.3
1,857,445 + PS417_08500 0.12 +0.4
1,857,446 - -1.3
1,857,446 - PS417_08500 0.13 +0.1
1,857,446 - PS417_08500 0.13 +0.2
1,857,446 - PS417_08500 0.13 -0.3

Or see this region's nucleotide sequence