Strain Fitness in Pseudomonas simiae WCS417 around PS417_07710

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07700 and PS417_07705 are separated by 110 nucleotidesPS417_07705 and PS417_07710 are separated by 195 nucleotidesPS417_07710 and PS417_07715 are separated by 60 nucleotidesPS417_07715 and PS417_07720 are separated by 276 nucleotides PS417_07700: PS417_07700 - chromosome partitioning protein ParA, at 1,696,817 to 1,697,083 _07700 PS417_07705: PS417_07705 - phosphatase, at 1,697,194 to 1,697,802 _07705 PS417_07710: PS417_07710 - membrane protein, at 1,697,998 to 1,698,687 _07710 PS417_07715: PS417_07715 - pilus assembly protein, at 1,698,748 to 1,699,044 _07715 PS417_07720: PS417_07720 - chemotaxis protein CheY, at 1,699,321 to 1,700,502 _07720 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -2 -1 0 1 2at 1697.099 kb on - strandat 1697.104 kb on + strandat 1697.116 kb on + strandat 1697.157 kb on - strandat 1697.157 kb on - strandat 1697.162 kb on - strandat 1697.162 kb on - strandat 1697.319 kb on + strand, within PS417_07705at 1697.320 kb on - strand, within PS417_07705at 1697.786 kb on - strandat 1697.868 kb on - strandat 1697.868 kb on - strandat 1697.891 kb on + strandat 1697.892 kb on - strandat 1697.892 kb on - strandat 1697.908 kb on - strandat 1697.908 kb on - strandat 1697.908 kb on - strandat 1697.918 kb on + strandat 1697.937 kb on + strandat 1697.938 kb on - strandat 1697.939 kb on + strandat 1697.939 kb on + strandat 1697.939 kb on + strandat 1697.939 kb on + strandat 1697.939 kb on + strandat 1697.939 kb on + strandat 1697.940 kb on - strandat 1697.951 kb on + strandat 1697.997 kb on + strandat 1697.998 kb on - strandat 1698.117 kb on + strand, within PS417_07710at 1698.138 kb on + strand, within PS417_07710at 1698.139 kb on - strand, within PS417_07710at 1698.139 kb on - strand, within PS417_07710at 1698.142 kb on + strand, within PS417_07710at 1698.142 kb on + strand, within PS417_07710at 1698.142 kb on + strand, within PS417_07710at 1698.142 kb on + strand, within PS417_07710at 1698.142 kb on + strand, within PS417_07710at 1698.143 kb on - strand, within PS417_07710at 1698.143 kb on - strand, within PS417_07710at 1698.425 kb on - strand, within PS417_07710at 1698.479 kb on - strand, within PS417_07710at 1698.479 kb on - strand, within PS417_07710at 1698.491 kb on - strand, within PS417_07710at 1698.509 kb on - strand, within PS417_07710at 1698.610 kb on + strand, within PS417_07710at 1698.610 kb on + strand, within PS417_07710at 1698.611 kb on - strand, within PS417_07710at 1698.632 kb on - strandat 1698.685 kb on + strandat 1698.686 kb on - strandat 1698.884 kb on - strand, within PS417_07715at 1699.057 kb on + strandat 1699.058 kb on - strandat 1699.085 kb on + strandat 1699.085 kb on + strandat 1699.085 kb on + strandat 1699.085 kb on + strandat 1699.086 kb on - strandat 1699.109 kb on + strandat 1699.109 kb on + strandat 1699.195 kb on + strandat 1699.243 kb on + strandat 1699.288 kb on + strandat 1699.298 kb on + strandat 1699.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,697,099 - -0.8
1,697,104 + +1.6
1,697,116 + +1.2
1,697,157 - -0.1
1,697,157 - -0.3
1,697,162 - -2.0
1,697,162 - +0.1
1,697,319 + PS417_07705 0.21 -0.5
1,697,320 - PS417_07705 0.21 -0.9
1,697,786 - -0.8
1,697,868 - -1.2
1,697,868 - -2.0
1,697,891 + +2.0
1,697,892 - -0.7
1,697,892 - -1.2
1,697,908 - -2.1
1,697,908 - -0.5
1,697,908 - -1.2
1,697,918 + -0.0
1,697,937 + +0.0
1,697,938 - -0.4
1,697,939 + -0.1
1,697,939 + +0.1
1,697,939 + +0.6
1,697,939 + +0.2
1,697,939 + +1.3
1,697,939 + -0.0
1,697,940 - -1.3
1,697,951 + -0.8
1,697,997 + +0.7
1,697,998 - -0.8
1,698,117 + PS417_07710 0.17 -1.0
1,698,138 + PS417_07710 0.20 -2.1
1,698,139 - PS417_07710 0.20 +0.7
1,698,139 - PS417_07710 0.20 +2.7
1,698,142 + PS417_07710 0.21 +1.7
1,698,142 + PS417_07710 0.21 -1.4
1,698,142 + PS417_07710 0.21 -0.7
1,698,142 + PS417_07710 0.21 -0.7
1,698,142 + PS417_07710 0.21 +0.3
1,698,143 - PS417_07710 0.21 -1.4
1,698,143 - PS417_07710 0.21 -1.5
1,698,425 - PS417_07710 0.62 +0.7
1,698,479 - PS417_07710 0.70 +0.1
1,698,479 - PS417_07710 0.70 +2.7
1,698,491 - PS417_07710 0.71 -1.7
1,698,509 - PS417_07710 0.74 +1.1
1,698,610 + PS417_07710 0.89 +0.6
1,698,610 + PS417_07710 0.89 +0.3
1,698,611 - PS417_07710 0.89 +1.1
1,698,632 - +0.9
1,698,685 + +0.7
1,698,686 - -0.7
1,698,884 - PS417_07715 0.46 -0.5
1,699,057 + +0.2
1,699,058 - -1.1
1,699,085 + -0.5
1,699,085 + -0.7
1,699,085 + -0.3
1,699,085 + -1.3
1,699,086 - +0.4
1,699,109 + -0.5
1,699,109 + +0.3
1,699,195 + +0.7
1,699,243 + +0.5
1,699,288 + +1.2
1,699,298 + +0.0
1,699,298 + +0.1

Or see this region's nucleotide sequence