Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07700 and PS417_07705 are separated by 110 nucleotides PS417_07705 and PS417_07710 are separated by 195 nucleotides PS417_07710 and PS417_07715 are separated by 60 nucleotides PS417_07715 and PS417_07720 are separated by 276 nucleotides
PS417_07700: PS417_07700 - chromosome partitioning protein ParA, at 1,696,817 to 1,697,083
_07700
PS417_07705: PS417_07705 - phosphatase, at 1,697,194 to 1,697,802
_07705
PS417_07710: PS417_07710 - membrane protein, at 1,697,998 to 1,698,687
_07710
PS417_07715: PS417_07715 - pilus assembly protein, at 1,698,748 to 1,699,044
_07715
PS417_07720: PS417_07720 - chemotaxis protein CheY, at 1,699,321 to 1,700,502
_07720
Position (kb)
1697
1698
1699 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1697.099 kb on - strand at 1697.104 kb on + strand at 1697.116 kb on + strand at 1697.157 kb on - strand at 1697.157 kb on - strand at 1697.162 kb on - strand at 1697.162 kb on - strand at 1697.319 kb on + strand, within PS417_07705 at 1697.320 kb on - strand, within PS417_07705 at 1697.786 kb on - strand at 1697.868 kb on - strand at 1697.868 kb on - strand at 1697.891 kb on + strand at 1697.892 kb on - strand at 1697.892 kb on - strand at 1697.908 kb on - strand at 1697.908 kb on - strand at 1697.908 kb on - strand at 1697.918 kb on + strand at 1697.937 kb on + strand at 1697.938 kb on - strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.940 kb on - strand at 1697.951 kb on + strand at 1697.997 kb on + strand at 1697.998 kb on - strand at 1698.117 kb on + strand, within PS417_07710 at 1698.138 kb on + strand, within PS417_07710 at 1698.139 kb on - strand, within PS417_07710 at 1698.139 kb on - strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.143 kb on - strand, within PS417_07710 at 1698.143 kb on - strand, within PS417_07710 at 1698.425 kb on - strand, within PS417_07710 at 1698.479 kb on - strand, within PS417_07710 at 1698.479 kb on - strand, within PS417_07710 at 1698.491 kb on - strand, within PS417_07710 at 1698.509 kb on - strand, within PS417_07710 at 1698.610 kb on + strand, within PS417_07710 at 1698.610 kb on + strand, within PS417_07710 at 1698.611 kb on - strand, within PS417_07710 at 1698.632 kb on - strand at 1698.685 kb on + strand at 1698.686 kb on - strand at 1698.884 kb on - strand, within PS417_07715 at 1699.057 kb on + strand at 1699.058 kb on - strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.086 kb on - strand at 1699.109 kb on + strand at 1699.109 kb on + strand at 1699.195 kb on + strand at 1699.243 kb on + strand at 1699.288 kb on + strand at 1699.298 kb on + strand at 1699.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,697,099 - -0.8 1,697,104 + +1.6 1,697,116 + +1.2 1,697,157 - -0.1 1,697,157 - -0.3 1,697,162 - -2.0 1,697,162 - +0.1 1,697,319 + PS417_07705 0.21 -0.5 1,697,320 - PS417_07705 0.21 -0.9 1,697,786 - -0.8 1,697,868 - -1.2 1,697,868 - -2.0 1,697,891 + +2.0 1,697,892 - -0.7 1,697,892 - -1.2 1,697,908 - -2.1 1,697,908 - -0.5 1,697,908 - -1.2 1,697,918 + -0.0 1,697,937 + +0.0 1,697,938 - -0.4 1,697,939 + -0.1 1,697,939 + +0.1 1,697,939 + +0.6 1,697,939 + +0.2 1,697,939 + +1.3 1,697,939 + -0.0 1,697,940 - -1.3 1,697,951 + -0.8 1,697,997 + +0.7 1,697,998 - -0.8 1,698,117 + PS417_07710 0.17 -1.0 1,698,138 + PS417_07710 0.20 -2.1 1,698,139 - PS417_07710 0.20 +0.7 1,698,139 - PS417_07710 0.20 +2.7 1,698,142 + PS417_07710 0.21 +1.7 1,698,142 + PS417_07710 0.21 -1.4 1,698,142 + PS417_07710 0.21 -0.7 1,698,142 + PS417_07710 0.21 -0.7 1,698,142 + PS417_07710 0.21 +0.3 1,698,143 - PS417_07710 0.21 -1.4 1,698,143 - PS417_07710 0.21 -1.5 1,698,425 - PS417_07710 0.62 +0.7 1,698,479 - PS417_07710 0.70 +0.1 1,698,479 - PS417_07710 0.70 +2.7 1,698,491 - PS417_07710 0.71 -1.7 1,698,509 - PS417_07710 0.74 +1.1 1,698,610 + PS417_07710 0.89 +0.6 1,698,610 + PS417_07710 0.89 +0.3 1,698,611 - PS417_07710 0.89 +1.1 1,698,632 - +0.9 1,698,685 + +0.7 1,698,686 - -0.7 1,698,884 - PS417_07715 0.46 -0.5 1,699,057 + +0.2 1,699,058 - -1.1 1,699,085 + -0.5 1,699,085 + -0.7 1,699,085 + -0.3 1,699,085 + -1.3 1,699,086 - +0.4 1,699,109 + -0.5 1,699,109 + +0.3 1,699,195 + +0.7 1,699,243 + +0.5 1,699,288 + +1.2 1,699,298 + +0.0 1,699,298 + +0.1
Or see this region's nucleotide sequence