Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06865 and PS417_06870 are separated by 220 nucleotides PS417_06870 and PS417_06875 are separated by 128 nucleotides
PS417_06865: PS417_06865 - transporter, at 1,518,923 to 1,519,822
_06865
PS417_06870: PS417_06870 - TonB-dependent receptor, at 1,520,043 to 1,522,601
_06870
PS417_06875: PS417_06875 - iron dicitrate transport regulator FecR, at 1,522,730 to 1,523,701
_06875
Position (kb)
1520
1521
1522
1523 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1519.132 kb on - strand, within PS417_06865 at 1519.173 kb on + strand, within PS417_06865 at 1519.444 kb on - strand, within PS417_06865 at 1519.864 kb on + strand at 1519.865 kb on - strand at 1519.893 kb on - strand at 1520.127 kb on - strand at 1520.242 kb on + strand at 1520.243 kb on - strand at 1520.281 kb on + strand at 1520.281 kb on + strand at 1520.281 kb on + strand at 1520.282 kb on - strand at 1520.462 kb on - strand, within PS417_06870 at 1520.489 kb on - strand, within PS417_06870 at 1520.489 kb on - strand, within PS417_06870 at 1520.489 kb on - strand, within PS417_06870 at 1520.630 kb on + strand at 1520.631 kb on - strand, within PS417_06870 at 1520.809 kb on + strand, within PS417_06870 at 1520.809 kb on + strand, within PS417_06870 at 1520.809 kb on + strand, within PS417_06870 at 1520.965 kb on + strand, within PS417_06870 at 1520.965 kb on + strand, within PS417_06870 at 1520.965 kb on + strand, within PS417_06870 at 1521.078 kb on - strand, within PS417_06870 at 1521.121 kb on + strand, within PS417_06870 at 1521.121 kb on + strand, within PS417_06870 at 1521.142 kb on + strand, within PS417_06870 at 1521.142 kb on + strand, within PS417_06870 at 1521.143 kb on - strand, within PS417_06870 at 1521.143 kb on - strand, within PS417_06870 at 1521.143 kb on - strand, within PS417_06870 at 1521.364 kb on + strand, within PS417_06870 at 1521.364 kb on + strand, within PS417_06870 at 1521.365 kb on - strand, within PS417_06870 at 1521.365 kb on - strand, within PS417_06870 at 1521.406 kb on + strand, within PS417_06870 at 1521.406 kb on + strand, within PS417_06870 at 1521.406 kb on + strand, within PS417_06870 at 1521.794 kb on - strand, within PS417_06870 at 1522.045 kb on - strand, within PS417_06870 at 1522.303 kb on + strand, within PS417_06870 at 1522.303 kb on + strand, within PS417_06870 at 1522.304 kb on - strand, within PS417_06870 at 1522.304 kb on - strand, within PS417_06870 at 1522.304 kb on - strand, within PS417_06870 at 1522.534 kb on - strand at 1522.534 kb on - strand at 1522.544 kb on + strand at 1522.638 kb on + strand at 1522.638 kb on + strand at 1522.638 kb on + strand at 1522.638 kb on + strand at 1522.639 kb on - strand at 1522.643 kb on - strand at 1522.752 kb on - strand at 1523.301 kb on + strand, within PS417_06875 at 1523.302 kb on - strand, within PS417_06875 at 1523.302 kb on - strand, within PS417_06875 at 1523.302 kb on - strand, within PS417_06875 at 1523.370 kb on + strand, within PS417_06875 at 1523.371 kb on - strand, within PS417_06875 at 1523.371 kb on - strand, within PS417_06875
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,519,132 - PS417_06865 0.23 +0.2 1,519,173 + PS417_06865 0.28 -0.0 1,519,444 - PS417_06865 0.58 -0.5 1,519,864 + -2.2 1,519,865 - +1.4 1,519,893 - +0.0 1,520,127 - +2.0 1,520,242 + -0.3 1,520,243 - -0.7 1,520,281 + -0.3 1,520,281 + -1.1 1,520,281 + -1.5 1,520,282 - +0.0 1,520,462 - PS417_06870 0.16 +0.1 1,520,489 - PS417_06870 0.17 -0.7 1,520,489 - PS417_06870 0.17 -0.4 1,520,489 - PS417_06870 0.17 -1.0 1,520,630 + +0.4 1,520,631 - PS417_06870 0.23 +0.4 1,520,809 + PS417_06870 0.30 -0.3 1,520,809 + PS417_06870 0.30 +0.6 1,520,809 + PS417_06870 0.30 -0.3 1,520,965 + PS417_06870 0.36 +0.1 1,520,965 + PS417_06870 0.36 -0.6 1,520,965 + PS417_06870 0.36 +0.7 1,521,078 - PS417_06870 0.40 -0.1 1,521,121 + PS417_06870 0.42 +0.2 1,521,121 + PS417_06870 0.42 -0.2 1,521,142 + PS417_06870 0.43 +0.1 1,521,142 + PS417_06870 0.43 +0.3 1,521,143 - PS417_06870 0.43 +0.8 1,521,143 - PS417_06870 0.43 -0.3 1,521,143 - PS417_06870 0.43 -0.2 1,521,364 + PS417_06870 0.52 -0.4 1,521,364 + PS417_06870 0.52 -0.9 1,521,365 - PS417_06870 0.52 +0.3 1,521,365 - PS417_06870 0.52 +0.3 1,521,406 + PS417_06870 0.53 +0.1 1,521,406 + PS417_06870 0.53 +0.3 1,521,406 + PS417_06870 0.53 -0.2 1,521,794 - PS417_06870 0.68 +0.5 1,522,045 - PS417_06870 0.78 +0.0 1,522,303 + PS417_06870 0.88 -0.3 1,522,303 + PS417_06870 0.88 +0.1 1,522,304 - PS417_06870 0.88 +0.3 1,522,304 - PS417_06870 0.88 -0.3 1,522,304 - PS417_06870 0.88 +0.8 1,522,534 - +0.5 1,522,534 - -0.2 1,522,544 + +0.4 1,522,638 + -0.5 1,522,638 + +0.5 1,522,638 + +0.5 1,522,638 + +1.5 1,522,639 - +0.6 1,522,643 - -0.6 1,522,752 - -0.5 1,523,301 + PS417_06875 0.59 +0.3 1,523,302 - PS417_06875 0.59 -0.5 1,523,302 - PS417_06875 0.59 -0.2 1,523,302 - PS417_06875 0.59 -0.1 1,523,370 + PS417_06875 0.66 +0.0 1,523,371 - PS417_06875 0.66 -0.6 1,523,371 - PS417_06875 0.66 +0.9
Or see this region's nucleotide sequence