Strain Fitness in Pseudomonas simiae WCS417 around PS417_06870

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06865 and PS417_06870 are separated by 220 nucleotidesPS417_06870 and PS417_06875 are separated by 128 nucleotides PS417_06865: PS417_06865 - transporter, at 1,518,923 to 1,519,822 _06865 PS417_06870: PS417_06870 - TonB-dependent receptor, at 1,520,043 to 1,522,601 _06870 PS417_06875: PS417_06875 - iron dicitrate transport regulator FecR, at 1,522,730 to 1,523,701 _06875 Position (kb) 1520 1521 1522 1523Strain fitness (log2 ratio) -2 -1 0 1 2at 1519.132 kb on - strand, within PS417_06865at 1519.173 kb on + strand, within PS417_06865at 1519.444 kb on - strand, within PS417_06865at 1519.864 kb on + strandat 1519.865 kb on - strandat 1519.893 kb on - strandat 1520.127 kb on - strandat 1520.242 kb on + strandat 1520.243 kb on - strandat 1520.281 kb on + strandat 1520.281 kb on + strandat 1520.281 kb on + strandat 1520.282 kb on - strandat 1520.462 kb on - strand, within PS417_06870at 1520.489 kb on - strand, within PS417_06870at 1520.489 kb on - strand, within PS417_06870at 1520.489 kb on - strand, within PS417_06870at 1520.630 kb on + strandat 1520.631 kb on - strand, within PS417_06870at 1520.809 kb on + strand, within PS417_06870at 1520.809 kb on + strand, within PS417_06870at 1520.809 kb on + strand, within PS417_06870at 1520.965 kb on + strand, within PS417_06870at 1520.965 kb on + strand, within PS417_06870at 1520.965 kb on + strand, within PS417_06870at 1521.078 kb on - strand, within PS417_06870at 1521.121 kb on + strand, within PS417_06870at 1521.121 kb on + strand, within PS417_06870at 1521.142 kb on + strand, within PS417_06870at 1521.142 kb on + strand, within PS417_06870at 1521.143 kb on - strand, within PS417_06870at 1521.143 kb on - strand, within PS417_06870at 1521.143 kb on - strand, within PS417_06870at 1521.364 kb on + strand, within PS417_06870at 1521.364 kb on + strand, within PS417_06870at 1521.365 kb on - strand, within PS417_06870at 1521.365 kb on - strand, within PS417_06870at 1521.406 kb on + strand, within PS417_06870at 1521.406 kb on + strand, within PS417_06870at 1521.406 kb on + strand, within PS417_06870at 1521.794 kb on - strand, within PS417_06870at 1522.045 kb on - strand, within PS417_06870at 1522.303 kb on + strand, within PS417_06870at 1522.303 kb on + strand, within PS417_06870at 1522.304 kb on - strand, within PS417_06870at 1522.304 kb on - strand, within PS417_06870at 1522.304 kb on - strand, within PS417_06870at 1522.534 kb on - strandat 1522.534 kb on - strandat 1522.544 kb on + strandat 1522.638 kb on + strandat 1522.638 kb on + strandat 1522.638 kb on + strandat 1522.638 kb on + strandat 1522.639 kb on - strandat 1522.643 kb on - strandat 1522.752 kb on - strandat 1523.301 kb on + strand, within PS417_06875at 1523.302 kb on - strand, within PS417_06875at 1523.302 kb on - strand, within PS417_06875at 1523.302 kb on - strand, within PS417_06875at 1523.370 kb on + strand, within PS417_06875at 1523.371 kb on - strand, within PS417_06875at 1523.371 kb on - strand, within PS417_06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,519,132 - PS417_06865 0.23 +0.2
1,519,173 + PS417_06865 0.28 -0.0
1,519,444 - PS417_06865 0.58 -0.5
1,519,864 + -2.2
1,519,865 - +1.4
1,519,893 - +0.0
1,520,127 - +2.0
1,520,242 + -0.3
1,520,243 - -0.7
1,520,281 + -0.3
1,520,281 + -1.1
1,520,281 + -1.5
1,520,282 - +0.0
1,520,462 - PS417_06870 0.16 +0.1
1,520,489 - PS417_06870 0.17 -0.7
1,520,489 - PS417_06870 0.17 -0.4
1,520,489 - PS417_06870 0.17 -1.0
1,520,630 + +0.4
1,520,631 - PS417_06870 0.23 +0.4
1,520,809 + PS417_06870 0.30 -0.3
1,520,809 + PS417_06870 0.30 +0.6
1,520,809 + PS417_06870 0.30 -0.3
1,520,965 + PS417_06870 0.36 +0.1
1,520,965 + PS417_06870 0.36 -0.6
1,520,965 + PS417_06870 0.36 +0.7
1,521,078 - PS417_06870 0.40 -0.1
1,521,121 + PS417_06870 0.42 +0.2
1,521,121 + PS417_06870 0.42 -0.2
1,521,142 + PS417_06870 0.43 +0.1
1,521,142 + PS417_06870 0.43 +0.3
1,521,143 - PS417_06870 0.43 +0.8
1,521,143 - PS417_06870 0.43 -0.3
1,521,143 - PS417_06870 0.43 -0.2
1,521,364 + PS417_06870 0.52 -0.4
1,521,364 + PS417_06870 0.52 -0.9
1,521,365 - PS417_06870 0.52 +0.3
1,521,365 - PS417_06870 0.52 +0.3
1,521,406 + PS417_06870 0.53 +0.1
1,521,406 + PS417_06870 0.53 +0.3
1,521,406 + PS417_06870 0.53 -0.2
1,521,794 - PS417_06870 0.68 +0.5
1,522,045 - PS417_06870 0.78 +0.0
1,522,303 + PS417_06870 0.88 -0.3
1,522,303 + PS417_06870 0.88 +0.1
1,522,304 - PS417_06870 0.88 +0.3
1,522,304 - PS417_06870 0.88 -0.3
1,522,304 - PS417_06870 0.88 +0.8
1,522,534 - +0.5
1,522,534 - -0.2
1,522,544 + +0.4
1,522,638 + -0.5
1,522,638 + +0.5
1,522,638 + +0.5
1,522,638 + +1.5
1,522,639 - +0.6
1,522,643 - -0.6
1,522,752 - -0.5
1,523,301 + PS417_06875 0.59 +0.3
1,523,302 - PS417_06875 0.59 -0.5
1,523,302 - PS417_06875 0.59 -0.2
1,523,302 - PS417_06875 0.59 -0.1
1,523,370 + PS417_06875 0.66 +0.0
1,523,371 - PS417_06875 0.66 -0.6
1,523,371 - PS417_06875 0.66 +0.9

Or see this region's nucleotide sequence