Strain Fitness in Pseudomonas simiae WCS417 around PS417_06770

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06765 and PS417_06770 overlap by 4 nucleotidesPS417_06770 and PS417_06775 are separated by 3 nucleotides PS417_06765: PS417_06765 - multidrug transporter, at 1,496,880 to 1,498,337 _06765 PS417_06770: PS417_06770 - multidrug transporter, at 1,498,334 to 1,501,495 _06770 PS417_06775: PS417_06775 - antibiotic transporter, at 1,501,499 to 1,502,653 _06775 Position (kb) 1498 1499 1500 1501 1502Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1498.769 kb on + strand, within PS417_06770at 1498.770 kb on - strand, within PS417_06770at 1498.832 kb on + strand, within PS417_06770at 1498.919 kb on - strand, within PS417_06770at 1499.167 kb on - strand, within PS417_06770at 1499.167 kb on - strand, within PS417_06770at 1499.208 kb on + strand, within PS417_06770at 1499.209 kb on - strand, within PS417_06770at 1499.521 kb on - strand, within PS417_06770at 1499.862 kb on + strand, within PS417_06770at 1499.917 kb on - strand, within PS417_06770at 1500.476 kb on + strand, within PS417_06770at 1500.673 kb on - strand, within PS417_06770at 1501.026 kb on + strand, within PS417_06770at 1501.026 kb on + strand, within PS417_06770at 1501.027 kb on - strand, within PS417_06770at 1501.250 kb on - strandat 1501.250 kb on - strandat 1501.250 kb on - strandat 1501.675 kb on - strand, within PS417_06775at 1501.678 kb on + strand, within PS417_06775at 1501.679 kb on - strand, within PS417_06775at 1501.679 kb on - strand, within PS417_06775at 1501.679 kb on - strand, within PS417_06775at 1501.942 kb on - strand, within PS417_06775at 1502.257 kb on - strand, within PS417_06775at 1502.257 kb on - strand, within PS417_06775at 1502.299 kb on - strand, within PS417_06775at 1502.362 kb on - strand, within PS417_06775at 1502.383 kb on - strand, within PS417_06775

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,498,769 + PS417_06770 0.14 -2.9
1,498,770 - PS417_06770 0.14 -2.4
1,498,832 + PS417_06770 0.16 +0.4
1,498,919 - PS417_06770 0.19 -4.4
1,499,167 - PS417_06770 0.26 -1.5
1,499,167 - PS417_06770 0.26 -3.2
1,499,208 + PS417_06770 0.28 -1.0
1,499,209 - PS417_06770 0.28 -3.4
1,499,521 - PS417_06770 0.38 -3.6
1,499,862 + PS417_06770 0.48 -4.1
1,499,917 - PS417_06770 0.50 -2.8
1,500,476 + PS417_06770 0.68 -1.7
1,500,673 - PS417_06770 0.74 +0.4
1,501,026 + PS417_06770 0.85 -5.0
1,501,026 + PS417_06770 0.85 -1.8
1,501,027 - PS417_06770 0.85 -3.2
1,501,250 - -1.8
1,501,250 - -3.1
1,501,250 - -3.8
1,501,675 - PS417_06775 0.15 -0.9
1,501,678 + PS417_06775 0.15 -3.2
1,501,679 - PS417_06775 0.16 -3.9
1,501,679 - PS417_06775 0.16 -2.7
1,501,679 - PS417_06775 0.16 -3.4
1,501,942 - PS417_06775 0.38 -5.9
1,502,257 - PS417_06775 0.66 -4.5
1,502,257 - PS417_06775 0.66 -2.6
1,502,299 - PS417_06775 0.69 -0.8
1,502,362 - PS417_06775 0.75 -2.7
1,502,383 - PS417_06775 0.77 -4.7

Or see this region's nucleotide sequence