Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06030 and PS417_06035 are separated by 168 nucleotides PS417_06035 and PS417_06040 are separated by 186 nucleotides PS417_06040 and PS417_06045 are separated by 29 nucleotides PS417_06045 and PS417_06050 are separated by 55 nucleotides PS417_06050 and PS417_06055 are separated by 270 nucleotides
PS417_06030: PS417_06030 - hypothetical protein, at 1,340,307 to 1,340,633
_06030
PS417_06035: PS417_06035 - hypothetical protein, at 1,340,802 to 1,341,146
_06035
PS417_06040: PS417_06040 - hypothetical protein, at 1,341,333 to 1,341,527
_06040
PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342
_06045
PS417_06050: PS417_06050 - chromosome partitioning protein ParA, at 1,342,398 to 1,342,823
_06050
PS417_06055: PS417_06055 - pilin assembly protein, at 1,343,094 to 1,343,438
_06055
Position (kb)
1341
1342
1343 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1340.687 kb on + strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.800 kb on - strand at 1340.802 kb on - strand at 1340.810 kb on + strand at 1340.915 kb on + strand, within PS417_06035 at 1340.927 kb on + strand, within PS417_06035 at 1341.201 kb on - strand at 1341.201 kb on - strand at 1341.288 kb on + strand at 1341.289 kb on - strand at 1341.289 kb on - strand at 1341.300 kb on - strand at 1341.314 kb on + strand at 1341.314 kb on + strand at 1341.318 kb on + strand at 1341.318 kb on + strand at 1341.319 kb on - strand at 1341.340 kb on + strand at 1341.388 kb on + strand, within PS417_06040 at 1341.388 kb on + strand, within PS417_06040 at 1341.389 kb on - strand, within PS417_06040 at 1341.417 kb on + strand, within PS417_06040 at 1341.526 kb on - strand at 1341.707 kb on - strand, within PS417_06045 at 1341.775 kb on - strand, within PS417_06045 at 1342.105 kb on - strand, within PS417_06045 at 1342.336 kb on + strand at 1342.399 kb on + strand at 1342.828 kb on + strand at 1343.073 kb on + strand at 1343.186 kb on - strand, within PS417_06055 at 1343.236 kb on + strand, within PS417_06055 at 1343.236 kb on + strand, within PS417_06055 at 1343.237 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,340,687 + +0.2 1,340,800 - -0.5 1,340,800 - -0.6 1,340,800 - -0.3 1,340,800 - -0.0 1,340,800 - -0.7 1,340,802 - -0.4 1,340,810 + +0.5 1,340,915 + PS417_06035 0.33 -1.2 1,340,927 + PS417_06035 0.36 -0.9 1,341,201 - -1.1 1,341,201 - +0.8 1,341,288 + -0.6 1,341,289 - -1.0 1,341,289 - +0.4 1,341,300 - -1.2 1,341,314 + -2.9 1,341,314 + -0.1 1,341,318 + -0.6 1,341,318 + +1.5 1,341,319 - -0.1 1,341,340 + +0.4 1,341,388 + PS417_06040 0.28 +0.4 1,341,388 + PS417_06040 0.28 -1.4 1,341,389 - PS417_06040 0.29 +1.1 1,341,417 + PS417_06040 0.43 -0.4 1,341,526 - +0.2 1,341,707 - PS417_06045 0.19 -0.3 1,341,775 - PS417_06045 0.28 +0.8 1,342,105 - PS417_06045 0.70 -0.2 1,342,336 + -0.3 1,342,399 + +0.4 1,342,828 + -1.4 1,343,073 + -1.9 1,343,186 - PS417_06055 0.27 +0.5 1,343,236 + PS417_06055 0.41 +2.5 1,343,236 + PS417_06055 0.41 -0.2 1,343,237 - PS417_06055 0.41 +0.2 1,343,315 - PS417_06055 0.64 -0.1 1,343,315 - PS417_06055 0.64 -0.3 1,343,315 - PS417_06055 0.64 -0.1
Or see this region's nucleotide sequence