Strain Fitness in Pseudomonas simiae WCS417 around PS417_05220

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05210 and PS417_05215 overlap by 1 nucleotidesPS417_05215 and PS417_05220 are separated by 79 nucleotidesPS417_05220 and PS417_05225 overlap by 4 nucleotidesPS417_05225 and PS417_05230 are separated by 36 nucleotides PS417_05210: PS417_05210 - copper oxidase, at 1,156,099 to 1,157,475 _05210 PS417_05215: PS417_05215 - zinc-binding protein, at 1,157,475 to 1,157,972 _05215 PS417_05220: PS417_05220 - tRNA methyltransferase, at 1,158,052 to 1,159,008 _05220 PS417_05225: PS417_05225 - tRNA methyltransferase, at 1,159,005 to 1,159,748 _05225 PS417_05230: PS417_05230 - membrane protein, at 1,159,785 to 1,160,441 _05230 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -1 0 1 2at 1157.230 kb on + strand, within PS417_05210at 1157.231 kb on - strand, within PS417_05210at 1157.233 kb on - strand, within PS417_05210at 1157.347 kb on + strandat 1157.347 kb on + strandat 1157.347 kb on + strandat 1157.348 kb on - strandat 1158.149 kb on + strand, within PS417_05220at 1158.149 kb on + strand, within PS417_05220at 1158.212 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.423 kb on - strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1159.191 kb on - strand, within PS417_05225at 1159.191 kb on - strand, within PS417_05225at 1159.444 kb on + strand, within PS417_05225at 1159.444 kb on + strand, within PS417_05225at 1159.564 kb on + strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.861 kb on + strand, within PS417_05230at 1159.861 kb on + strand, within PS417_05230at 1159.879 kb on + strand, within PS417_05230

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,157,230 + PS417_05210 0.82 -1.4
1,157,231 - PS417_05210 0.82 -1.4
1,157,233 - PS417_05210 0.82 -0.2
1,157,347 + -1.5
1,157,347 + -1.4
1,157,347 + -0.9
1,157,348 - +1.7
1,158,149 + PS417_05220 0.10 -0.4
1,158,149 + PS417_05220 0.10 -0.5
1,158,212 - PS417_05220 0.17 -1.6
1,158,275 - PS417_05220 0.23 -1.2
1,158,275 - PS417_05220 0.23 -0.8
1,158,280 - PS417_05220 0.24 -0.6
1,158,280 - PS417_05220 0.24 +2.4
1,158,423 - PS417_05220 0.39 +0.2
1,158,614 + PS417_05220 0.59 -0.5
1,158,614 + PS417_05220 0.59 -0.1
1,158,615 - PS417_05220 0.59 -1.5
1,158,615 - PS417_05220 0.59 -0.9
1,158,615 - PS417_05220 0.59 -0.4
1,159,191 - PS417_05225 0.25 -0.1
1,159,191 - PS417_05225 0.25 -0.1
1,159,444 + PS417_05225 0.59 -0.7
1,159,444 + PS417_05225 0.59 -0.8
1,159,564 + PS417_05225 0.75 -0.5
1,159,565 - PS417_05225 0.75 -0.5
1,159,565 - PS417_05225 0.75 -0.6
1,159,565 - PS417_05225 0.75 +0.2
1,159,861 + PS417_05230 0.12 +1.4
1,159,861 + PS417_05230 0.12 +0.2
1,159,879 + PS417_05230 0.14 +0.6

Or see this region's nucleotide sequence