Strain Fitness in Pseudomonas simiae WCS417 around PS417_00450

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00445 and PS417_00450 are separated by 10 nucleotidesPS417_00450 and PS417_00455 are separated by 376 nucleotidesPS417_00455 and PS417_00460 are separated by 79 nucleotidesPS417_00460 and PS417_00465 are separated by 2 nucleotides PS417_00445: PS417_00445 - histidine kinase, at 87,428 to 89,215 _00445 PS417_00450: PS417_00450 - chemotaxis protein CheY, at 89,226 to 90,572 _00450 PS417_00455: PS417_00455 - hypothetical protein, at 90,949 to 91,233 _00455 PS417_00460: PS417_00460 - membrane protein, at 91,313 to 91,477 _00460 PS417_00465: PS417_00465 - hypothetical protein, at 91,480 to 91,947 _00465 Position (kb) 89 90 91Strain fitness (log2 ratio) -1 0 1at 88.296 kb on - strand, within PS417_00445at 88.428 kb on - strand, within PS417_00445at 88.428 kb on - strand, within PS417_00445at 88.962 kb on + strand, within PS417_00445at 88.962 kb on + strand, within PS417_00445at 88.963 kb on - strandat 89.068 kb on + strandat 89.173 kb on + strandat 89.174 kb on - strandat 89.216 kb on - strandat 89.216 kb on - strandat 89.220 kb on + strandat 89.220 kb on + strandat 89.221 kb on - strandat 89.221 kb on - strandat 89.221 kb on - strandat 89.236 kb on + strandat 89.237 kb on - strandat 89.319 kb on + strandat 89.469 kb on - strand, within PS417_00450at 89.501 kb on - strand, within PS417_00450at 89.554 kb on + strand, within PS417_00450at 89.554 kb on + strand, within PS417_00450at 89.555 kb on - strand, within PS417_00450at 90.153 kb on + strand, within PS417_00450at 90.154 kb on - strand, within PS417_00450at 90.324 kb on + strand, within PS417_00450at 90.475 kb on + strandat 90.475 kb on + strandat 90.475 kb on + strandat 90.476 kb on - strandat 90.535 kb on - strandat 90.589 kb on - strandat 90.594 kb on - strandat 90.594 kb on - strandat 90.610 kb on - strandat 90.643 kb on - strandat 90.675 kb on + strandat 90.675 kb on + strandat 90.676 kb on - strandat 90.676 kb on - strandat 90.676 kb on - strandat 90.692 kb on - strandat 90.729 kb on + strandat 90.730 kb on - strandat 90.908 kb on + strandat 90.908 kb on + strandat 90.909 kb on - strandat 90.925 kb on - strandat 90.981 kb on - strand, within PS417_00455at 91.143 kb on - strand, within PS417_00455at 91.143 kb on - strand, within PS417_00455at 91.231 kb on + strandat 91.232 kb on - strandat 91.274 kb on - strandat 91.283 kb on - strandat 91.289 kb on + strandat 91.289 kb on + strandat 91.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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88,296 - PS417_00445 0.49 -0.4
88,428 - PS417_00445 0.56 -0.2
88,428 - PS417_00445 0.56 -0.7
88,962 + PS417_00445 0.86 -0.4
88,962 + PS417_00445 0.86 -0.1
88,963 - -0.9
89,068 + +0.0
89,173 + -1.4
89,174 - +0.8
89,216 - -0.2
89,216 - +0.1
89,220 + +0.4
89,220 + -0.2
89,221 - +0.3
89,221 - -0.4
89,221 - +0.9
89,236 + +0.4
89,237 - +0.8
89,319 + -0.5
89,469 - PS417_00450 0.18 +0.1
89,501 - PS417_00450 0.20 -0.6
89,554 + PS417_00450 0.24 -0.4
89,554 + PS417_00450 0.24 -0.5
89,555 - PS417_00450 0.24 +1.7
90,153 + PS417_00450 0.69 -0.2
90,154 - PS417_00450 0.69 -0.3
90,324 + PS417_00450 0.82 +0.6
90,475 + +0.4
90,475 + +1.4
90,475 + +0.4
90,476 - +0.0
90,535 - -0.4
90,589 - +0.3
90,594 - +1.2
90,594 - -0.1
90,610 - +0.6
90,643 - +0.7
90,675 + -0.1
90,675 + +0.4
90,676 - -1.0
90,676 - -0.7
90,676 - -0.1
90,692 - +0.4
90,729 + +0.8
90,730 - -0.0
90,908 + +1.4
90,908 + +0.6
90,909 - +0.3
90,925 - -0.1
90,981 - PS417_00455 0.11 +1.6
91,143 - PS417_00455 0.68 +0.8
91,143 - PS417_00455 0.68 -0.1
91,231 + +0.0
91,232 - +0.8
91,274 - +0.3
91,283 - -0.4
91,289 + -0.2
91,289 + +1.2
91,300 - -0.5

Or see this region's nucleotide sequence