Strain Fitness in Pseudomonas simiae WCS417 around PS417_19205

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19200 and PS417_19205 overlap by 4 nucleotidesPS417_19205 and PS417_19210 are separated by 130 nucleotides PS417_19200: PS417_19200 - fumarate hydratase, at 4,160,187 to 4,161,569 _19200 PS417_19205: PS417_19205 - membrane protein, at 4,161,566 to 4,162,522 _19205 PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837 _19210 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -1 0 1at 4160.744 kb on + strand, within PS417_19200at 4161.262 kb on - strand, within PS417_19200at 4161.465 kb on + strandat 4161.510 kb on + strandat 4161.554 kb on + strandat 4161.554 kb on + strandat 4161.554 kb on + strandat 4161.699 kb on + strand, within PS417_19205at 4161.700 kb on - strand, within PS417_19205at 4161.832 kb on + strand, within PS417_19205at 4161.933 kb on + strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.996 kb on + strand, within PS417_19205at 4161.997 kb on - strand, within PS417_19205at 4162.010 kb on - strand, within PS417_19205at 4162.047 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.252 kb on - strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.560 kb on + strandat 4162.601 kb on + strandat 4162.730 kb on + strandat 4162.730 kb on + strandat 4162.825 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.249 kb on - strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.405 kb on - strand, within PS417_19210

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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4,160,744 + PS417_19200 0.40 -0.5
4,161,262 - PS417_19200 0.78 +0.5
4,161,465 + +0.2
4,161,510 + +0.4
4,161,554 + +0.4
4,161,554 + +0.1
4,161,554 + -0.4
4,161,699 + PS417_19205 0.14 -0.2
4,161,700 - PS417_19205 0.14 -0.5
4,161,832 + PS417_19205 0.28 -1.6
4,161,933 + PS417_19205 0.38 -0.5
4,161,934 - PS417_19205 0.38 -1.7
4,161,934 - PS417_19205 0.38 -0.3
4,161,996 + PS417_19205 0.45 -0.7
4,161,997 - PS417_19205 0.45 +0.3
4,162,010 - PS417_19205 0.46 -0.9
4,162,047 + PS417_19205 0.50 -0.7
4,162,130 + PS417_19205 0.59 -0.2
4,162,130 + PS417_19205 0.59 -0.0
4,162,251 + PS417_19205 0.72 -0.1
4,162,251 + PS417_19205 0.72 -1.0
4,162,251 + PS417_19205 0.72 +0.2
4,162,252 - PS417_19205 0.72 -0.3
4,162,260 + PS417_19205 0.73 -0.5
4,162,260 + PS417_19205 0.73 -0.1
4,162,560 + -0.5
4,162,601 + -0.3
4,162,730 + +0.1
4,162,730 + +0.5
4,162,825 + PS417_19210 0.15 -0.3
4,163,248 + PS417_19210 0.50 +0.1
4,163,248 + PS417_19210 0.50 -0.3
4,163,248 + PS417_19210 0.50 -0.3
4,163,249 - PS417_19210 0.50 +0.6
4,163,332 + PS417_19210 0.57 +1.0
4,163,332 + PS417_19210 0.57 +0.0
4,163,332 + PS417_19210 0.57 +0.0
4,163,332 + PS417_19210 0.57 +0.6
4,163,333 - PS417_19210 0.57 -0.2
4,163,333 - PS417_19210 0.57 -0.4
4,163,333 - PS417_19210 0.57 -0.8
4,163,333 - PS417_19210 0.57 -1.2
4,163,333 - PS417_19210 0.57 -0.6
4,163,405 - PS417_19210 0.63 +0.2

Or see this region's nucleotide sequence