Strain Fitness in Pseudomonas simiae WCS417 around PS417_18110

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18105 and PS417_18110 are separated by 224 nucleotidesPS417_18110 and PS417_18115 are separated by 84 nucleotides PS417_18105: PS417_18105 - iron-dicitrate transporter substrate-binding subunit, at 3,942,892 to 3,943,812 _18105 PS417_18110: PS417_18110 - TonB-dependent receptor, at 3,944,037 to 3,946,427 _18110 PS417_18115: PS417_18115 - gamma-glutamyltransferase, at 3,946,512 to 3,948,122 _18115 Position (kb) 3944 3945 3946 3947Strain fitness (log2 ratio) -1 0 1 2at 3943.215 kb on - strand, within PS417_18105at 3943.457 kb on + strand, within PS417_18105at 3943.871 kb on + strandat 3943.957 kb on - strandat 3943.957 kb on - strandat 3943.957 kb on - strandat 3943.969 kb on - strandat 3944.039 kb on - strandat 3944.070 kb on - strandat 3944.131 kb on + strandat 3944.263 kb on + strandat 3944.351 kb on - strand, within PS417_18110at 3944.388 kb on - strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.422 kb on + strand, within PS417_18110at 3944.423 kb on - strand, within PS417_18110at 3944.599 kb on + strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.705 kb on - strand, within PS417_18110at 3944.978 kb on - strand, within PS417_18110at 3944.999 kb on + strand, within PS417_18110at 3945.000 kb on - strand, within PS417_18110at 3945.260 kb on - strand, within PS417_18110at 3945.319 kb on + strand, within PS417_18110at 3945.320 kb on - strand, within PS417_18110at 3945.782 kb on - strand, within PS417_18110at 3945.793 kb on + strand, within PS417_18110at 3945.943 kb on + strand, within PS417_18110at 3946.118 kb on + strandat 3946.118 kb on + strand, within PS417_18110at 3946.120 kb on + strand, within PS417_18110at 3946.120 kb on + strand, within PS417_18110at 3946.195 kb on + strandat 3946.196 kb on - strandat 3946.319 kb on - strandat 3946.319 kb on - strandat 3946.319 kb on - strandat 3946.349 kb on - strandat 3946.444 kb on + strandat 3946.444 kb on + strandat 3946.444 kb on + strandat 3946.445 kb on - strandat 3946.513 kb on + strandat 3946.563 kb on + strandat 3946.563 kb on + strandat 3946.563 kb on + strandat 3946.564 kb on - strandat 3947.053 kb on + strand, within PS417_18115at 3947.191 kb on + strand, within PS417_18115at 3947.192 kb on - strandat 3947.420 kb on - strand, within PS417_18115

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,943,215 - PS417_18105 0.35 -0.0
3,943,457 + PS417_18105 0.61 -0.2
3,943,871 + +0.1
3,943,957 - -0.2
3,943,957 - -0.4
3,943,957 - -0.2
3,943,969 - +0.5
3,944,039 - +1.5
3,944,070 - -0.7
3,944,131 + -0.5
3,944,263 + -0.5
3,944,351 - PS417_18110 0.13 +2.0
3,944,388 - PS417_18110 0.15 -0.3
3,944,422 + PS417_18110 0.16 +0.2
3,944,422 + PS417_18110 0.16 +0.7
3,944,422 + PS417_18110 0.16 +0.4
3,944,423 - PS417_18110 0.16 -0.1
3,944,599 + PS417_18110 0.24 +1.5
3,944,705 - PS417_18110 0.28 -0.2
3,944,705 - PS417_18110 0.28 +0.4
3,944,705 - PS417_18110 0.28 -0.2
3,944,705 - PS417_18110 0.28 +0.8
3,944,978 - PS417_18110 0.39 +0.2
3,944,999 + PS417_18110 0.40 +0.0
3,945,000 - PS417_18110 0.40 +0.3
3,945,260 - PS417_18110 0.51 +0.8
3,945,319 + PS417_18110 0.54 +0.8
3,945,320 - PS417_18110 0.54 -0.3
3,945,782 - PS417_18110 0.73 +0.6
3,945,793 + PS417_18110 0.73 -0.1
3,945,943 + PS417_18110 0.80 +0.5
3,946,118 + +2.2
3,946,118 + PS417_18110 0.87 +0.8
3,946,120 + PS417_18110 0.87 +0.7
3,946,120 + PS417_18110 0.87 +0.3
3,946,195 + -0.0
3,946,196 - -0.8
3,946,319 - -0.5
3,946,319 - +0.1
3,946,319 - -0.9
3,946,349 - +0.8
3,946,444 + +0.6
3,946,444 + -1.2
3,946,444 + +1.4
3,946,445 - +1.5
3,946,513 + -0.5
3,946,563 + +0.0
3,946,563 + +0.5
3,946,563 + +0.1
3,946,564 - -0.3
3,947,053 + PS417_18115 0.34 -0.2
3,947,191 + PS417_18115 0.42 -0.1
3,947,192 - +0.5
3,947,420 - PS417_18115 0.56 +0.1

Or see this region's nucleotide sequence