Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05670 and PS417_05675 are separated by 489 nucleotides PS417_05675 and PS417_05680 are separated by 142 nucleotides PS417_05680 and PS417_05685 are separated by 169 nucleotides PS417_05685 and PS417_05690 overlap by 8 nucleotides
PS417_05670: PS417_05670 - ATP-binding protein, at 1,274,765 to 1,275,859
_05670
PS417_05675: PS417_05675 - ferredoxin, at 1,276,349 to 1,276,672
_05675
PS417_05680: PS417_05680 - DNA mismatch repair protein MutS, at 1,276,815 to 1,279,406
_05680
PS417_05685: PS417_05685 - hypothetical protein, at 1,279,576 to 1,279,947
_05685
PS417_05690: PS417_05690 - hypothetical protein, at 1,279,940 to 1,280,428
_05690
Position (kb)
1276
1277
1278
1279
1280 Strain fitness (log2 ratio)
-2
-1
0
1 at 1275.955 kb on - strand at 1275.955 kb on - strand at 1276.225 kb on + strand at 1276.794 kb on - strand at 1276.810 kb on + strand at 1276.811 kb on - strand at 1276.817 kb on - strand at 1276.817 kb on - strand at 1276.837 kb on + strand at 1276.837 kb on + strand at 1276.837 kb on + strand at 1276.838 kb on - strand at 1277.115 kb on + strand, within PS417_05680 at 1277.115 kb on + strand, within PS417_05680 at 1277.136 kb on - strand, within PS417_05680 at 1277.237 kb on - strand, within PS417_05680 at 1277.388 kb on - strand, within PS417_05680 at 1277.530 kb on + strand, within PS417_05680 at 1277.530 kb on + strand, within PS417_05680 at 1277.530 kb on + strand, within PS417_05680 at 1277.531 kb on - strand, within PS417_05680 at 1277.531 kb on - strand, within PS417_05680 at 1277.541 kb on - strand, within PS417_05680 at 1277.634 kb on + strand, within PS417_05680 at 1277.634 kb on + strand, within PS417_05680 at 1277.634 kb on + strand, within PS417_05680 at 1277.736 kb on + strand, within PS417_05680 at 1277.736 kb on + strand, within PS417_05680 at 1277.736 kb on + strand, within PS417_05680 at 1277.736 kb on + strand, within PS417_05680 at 1277.736 kb on + strand, within PS417_05680 at 1277.737 kb on - strand, within PS417_05680 at 1277.737 kb on - strand, within PS417_05680 at 1277.895 kb on - strand, within PS417_05680 at 1277.998 kb on + strand, within PS417_05680 at 1278.324 kb on - strand, within PS417_05680 at 1278.419 kb on + strand, within PS417_05680 at 1278.419 kb on + strand, within PS417_05680 at 1278.419 kb on + strand, within PS417_05680 at 1278.419 kb on + strand, within PS417_05680 at 1278.420 kb on - strand, within PS417_05680 at 1278.423 kb on - strand, within PS417_05680 at 1278.677 kb on - strand, within PS417_05680 at 1279.062 kb on - strand, within PS417_05680 at 1279.168 kb on + strand at 1279.169 kb on - strand at 1279.283 kb on - strand at 1279.294 kb on + strand at 1279.313 kb on - strand at 1279.354 kb on + strand at 1279.401 kb on - strand at 1279.487 kb on + strand at 1279.529 kb on - strand at 1279.529 kb on - strand at 1279.567 kb on + strand at 1279.567 kb on + strand at 1279.567 kb on + strand at 1279.568 kb on - strand at 1279.568 kb on - strand at 1279.578 kb on - strand at 1279.659 kb on + strand, within PS417_05685 at 1279.660 kb on - strand, within PS417_05685 at 1279.665 kb on + strand, within PS417_05685 at 1279.666 kb on - strand, within PS417_05685 at 1279.706 kb on + strand, within PS417_05685 at 1279.706 kb on + strand, within PS417_05685 at 1279.707 kb on - strand, within PS417_05685 at 1279.735 kb on + strand, within PS417_05685 at 1279.736 kb on - strand, within PS417_05685 at 1279.736 kb on - strand, within PS417_05685 at 1279.791 kb on - strand at 1280.083 kb on - strand, within PS417_05690 at 1280.087 kb on - strand, within PS417_05690 at 1280.087 kb on - strand, within PS417_05690 at 1280.118 kb on + strand, within PS417_05690 at 1280.118 kb on + strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.119 kb on - strand, within PS417_05690 at 1280.177 kb on - strand, within PS417_05690 at 1280.325 kb on + strand, within PS417_05690 at 1280.326 kb on - strand, within PS417_05690
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 1,275,955 - -0.5 1,275,955 - -0.7 1,276,225 + -0.5 1,276,794 - -0.2 1,276,810 + -0.3 1,276,811 - -0.7 1,276,817 - -0.9 1,276,817 - -0.1 1,276,837 + -0.5 1,276,837 + +1.5 1,276,837 + -1.7 1,276,838 - +0.1 1,277,115 + PS417_05680 0.12 +0.8 1,277,115 + PS417_05680 0.12 +0.2 1,277,136 - PS417_05680 0.12 -0.4 1,277,237 - PS417_05680 0.16 +0.5 1,277,388 - PS417_05680 0.22 -0.0 1,277,530 + PS417_05680 0.28 -0.3 1,277,530 + PS417_05680 0.28 -0.3 1,277,530 + PS417_05680 0.28 +1.1 1,277,531 - PS417_05680 0.28 +0.1 1,277,531 - PS417_05680 0.28 -0.2 1,277,541 - PS417_05680 0.28 -0.5 1,277,634 + PS417_05680 0.32 -0.4 1,277,634 + PS417_05680 0.32 -0.3 1,277,634 + PS417_05680 0.32 +0.9 1,277,736 + PS417_05680 0.36 +1.0 1,277,736 + PS417_05680 0.36 -0.1 1,277,736 + PS417_05680 0.36 +0.5 1,277,736 + PS417_05680 0.36 -0.3 1,277,736 + PS417_05680 0.36 -0.5 1,277,737 - PS417_05680 0.36 -0.3 1,277,737 - PS417_05680 0.36 +0.2 1,277,895 - PS417_05680 0.42 -0.5 1,277,998 + PS417_05680 0.46 +0.2 1,278,324 - PS417_05680 0.58 -0.5 1,278,419 + PS417_05680 0.62 +0.4 1,278,419 + PS417_05680 0.62 -0.5 1,278,419 + PS417_05680 0.62 -0.7 1,278,419 + PS417_05680 0.62 -0.8 1,278,420 - PS417_05680 0.62 +0.2 1,278,423 - PS417_05680 0.62 +0.0 1,278,677 - PS417_05680 0.72 +0.1 1,279,062 - PS417_05680 0.87 -0.2 1,279,168 + -0.3 1,279,169 - -1.3 1,279,283 - +0.1 1,279,294 + -0.8 1,279,313 - -0.4 1,279,354 + -0.2 1,279,401 - -0.2 1,279,487 + -0.5 1,279,529 - -0.2 1,279,529 - -0.8 1,279,567 + -0.6 1,279,567 + -0.4 1,279,567 + +1.2 1,279,568 - -0.3 1,279,568 - -0.4 1,279,578 - -0.7 1,279,659 + PS417_05685 0.22 -0.5 1,279,660 - PS417_05685 0.23 +0.5 1,279,665 + PS417_05685 0.24 +0.2 1,279,666 - PS417_05685 0.24 -0.3 1,279,706 + PS417_05685 0.35 +0.3 1,279,706 + PS417_05685 0.35 -0.0 1,279,707 - PS417_05685 0.35 +0.1 1,279,735 + PS417_05685 0.43 +0.0 1,279,736 - PS417_05685 0.43 +0.6 1,279,736 - PS417_05685 0.43 +0.2 1,279,791 - +0.3 1,280,083 - PS417_05690 0.29 +0.5 1,280,087 - PS417_05690 0.30 +0.7 1,280,087 - PS417_05690 0.30 +0.4 1,280,118 + PS417_05690 0.36 -0.4 1,280,118 + PS417_05690 0.36 +0.4 1,280,119 - PS417_05690 0.37 +1.1 1,280,119 - PS417_05690 0.37 -2.1 1,280,119 - PS417_05690 0.37 +0.4 1,280,119 - PS417_05690 0.37 -0.8 1,280,119 - PS417_05690 0.37 +0.4 1,280,119 - PS417_05690 0.37 -0.3 1,280,177 - PS417_05690 0.48 -0.1 1,280,325 + PS417_05690 0.79 -0.4 1,280,326 - PS417_05690 0.79 -0.2
Or see this region's nucleotide sequence