Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04815 and PS417_04820 are separated by 11 nucleotides PS417_04820 and PS417_04825 overlap by 1 nucleotides
PS417_04815: PS417_04815 - alginate O-acetyltransferase, at 1,066,937 to 1,068,385
_04815
PS417_04820: PS417_04820 - poly(beta-D-mannuronate) C5 epimerase, at 1,068,397 to 1,069,986
_04820
PS417_04825: PS417_04825 - alginate regulatory protein, at 1,069,986 to 1,071,473
_04825
Position (kb)
1068
1069
1070 Strain fitness (log2 ratio)
-1
0
1
2 at 1067.548 kb on - strand, within PS417_04815 at 1067.548 kb on - strand, within PS417_04815 at 1067.662 kb on - strand, within PS417_04815 at 1067.662 kb on - strand, within PS417_04815 at 1067.863 kb on - strand, within PS417_04815 at 1067.931 kb on + strand, within PS417_04815 at 1067.931 kb on + strand, within PS417_04815 at 1067.932 kb on - strand, within PS417_04815 at 1067.967 kb on + strand, within PS417_04815 at 1068.054 kb on + strand, within PS417_04815 at 1068.228 kb on + strand, within PS417_04815 at 1068.385 kb on + strand at 1068.833 kb on + strand, within PS417_04820 at 1068.901 kb on - strand, within PS417_04820 at 1069.067 kb on + strand, within PS417_04820 at 1069.085 kb on + strand, within PS417_04820 at 1069.085 kb on + strand, within PS417_04820 at 1069.086 kb on - strand, within PS417_04820 at 1069.089 kb on + strand, within PS417_04820 at 1069.090 kb on - strand, within PS417_04820 at 1069.121 kb on + strand, within PS417_04820 at 1069.127 kb on + strand, within PS417_04820 at 1069.227 kb on + strand, within PS417_04820 at 1069.228 kb on - strand, within PS417_04820 at 1069.245 kb on + strand, within PS417_04820 at 1069.246 kb on - strand, within PS417_04820 at 1069.246 kb on - strand, within PS417_04820 at 1069.289 kb on + strand, within PS417_04820 at 1069.290 kb on - strand, within PS417_04820 at 1069.290 kb on - strand, within PS417_04820 at 1069.525 kb on + strand, within PS417_04820 at 1069.525 kb on + strand, within PS417_04820 at 1069.592 kb on + strand, within PS417_04820 at 1069.835 kb on + strand at 1069.836 kb on - strand at 1069.836 kb on - strand at 1070.026 kb on + strand at 1070.026 kb on + strand at 1070.026 kb on + strand at 1070.026 kb on + strand at 1070.150 kb on - strand, within PS417_04825 at 1070.321 kb on - strand, within PS417_04825 at 1070.503 kb on + strand, within PS417_04825 at 1070.671 kb on + strand, within PS417_04825 at 1070.672 kb on - strand, within PS417_04825 at 1070.701 kb on + strand, within PS417_04825 at 1070.860 kb on + strand, within PS417_04825
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 1,067,548 - PS417_04815 0.42 -0.9 1,067,548 - PS417_04815 0.42 +0.1 1,067,662 - PS417_04815 0.50 -0.3 1,067,662 - PS417_04815 0.50 +1.8 1,067,863 - PS417_04815 0.64 -0.5 1,067,931 + PS417_04815 0.69 +0.1 1,067,931 + PS417_04815 0.69 +1.2 1,067,932 - PS417_04815 0.69 -0.3 1,067,967 + PS417_04815 0.71 +0.8 1,068,054 + PS417_04815 0.77 -0.6 1,068,228 + PS417_04815 0.89 -0.6 1,068,385 + +1.2 1,068,833 + PS417_04820 0.27 -0.0 1,068,901 - PS417_04820 0.32 +0.9 1,069,067 + PS417_04820 0.42 +0.4 1,069,085 + PS417_04820 0.43 +0.6 1,069,085 + PS417_04820 0.43 +0.2 1,069,086 - PS417_04820 0.43 -1.6 1,069,089 + PS417_04820 0.44 +0.0 1,069,090 - PS417_04820 0.44 +0.1 1,069,121 + PS417_04820 0.46 +0.3 1,069,127 + PS417_04820 0.46 +0.1 1,069,227 + PS417_04820 0.52 -1.3 1,069,228 - PS417_04820 0.52 -0.2 1,069,245 + PS417_04820 0.53 +0.1 1,069,246 - PS417_04820 0.53 -0.3 1,069,246 - PS417_04820 0.53 +0.0 1,069,289 + PS417_04820 0.56 -0.6 1,069,290 - PS417_04820 0.56 -0.4 1,069,290 - PS417_04820 0.56 +1.0 1,069,525 + PS417_04820 0.71 -0.4 1,069,525 + PS417_04820 0.71 +0.9 1,069,592 + PS417_04820 0.75 -0.6 1,069,835 + -1.6 1,069,836 - +0.3 1,069,836 - -0.6 1,070,026 + -0.7 1,070,026 + -0.5 1,070,026 + -1.0 1,070,026 + -0.7 1,070,150 - PS417_04825 0.11 +0.1 1,070,321 - PS417_04825 0.23 +0.2 1,070,503 + PS417_04825 0.35 +0.4 1,070,671 + PS417_04825 0.46 -0.8 1,070,672 - PS417_04825 0.46 +0.6 1,070,701 + PS417_04825 0.48 -0.5 1,070,860 + PS417_04825 0.59 +0.4
Or see this region's nucleotide sequence