Strain Fitness in Pseudomonas simiae WCS417 around PS417_27660

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27655 and PS417_27660 are separated by 149 nucleotidesPS417_27660 and PS417_27665 are separated by 66 nucleotides PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648 _27655 PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201 _27660 PS417_27665: PS417_27665 - diguanylate cyclase, at 5,966,268 to 5,967,932 _27665 Position (kb) 5964 5965 5966 5967Strain fitness (log2 ratio) -2 -1 0 1 2at 5963.840 kb on + strand, within PS417_27655at 5963.840 kb on + strand, within PS417_27655at 5963.843 kb on + strand, within PS417_27655at 5963.844 kb on - strand, within PS417_27655at 5964.163 kb on + strand, within PS417_27655at 5964.163 kb on + strandat 5964.163 kb on + strand, within PS417_27655at 5964.163 kb on + strand, within PS417_27655at 5964.167 kb on + strand, within PS417_27655at 5964.167 kb on + strand, within PS417_27655at 5964.168 kb on - strand, within PS417_27655at 5964.201 kb on - strand, within PS417_27655at 5964.393 kb on + strand, within PS417_27655at 5964.553 kb on - strand, within PS417_27655at 5964.624 kb on - strandat 5964.662 kb on - strandat 5964.662 kb on - strandat 5964.681 kb on - strandat 5964.787 kb on - strandat 5964.966 kb on + strand, within PS417_27660at 5965.317 kb on + strand, within PS417_27660at 5965.317 kb on + strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.434 kb on + strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.456 kb on - strandat 5965.456 kb on - strand, within PS417_27660at 5965.503 kb on + strand, within PS417_27660at 5965.548 kb on + strand, within PS417_27660at 5966.002 kb on - strandat 5966.169 kb on + strandat 5966.170 kb on - strandat 5966.208 kb on + strandat 5966.308 kb on + strandat 5966.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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5,963,840 + PS417_27655 0.12 +0.2
5,963,840 + PS417_27655 0.12 +1.8
5,963,843 + PS417_27655 0.12 -0.3
5,963,844 - PS417_27655 0.13 +0.0
5,964,163 + PS417_27655 0.47 +0.2
5,964,163 + -0.5
5,964,163 + PS417_27655 0.47 -0.2
5,964,163 + PS417_27655 0.47 -1.8
5,964,167 + PS417_27655 0.48 +0.3
5,964,167 + PS417_27655 0.48 +0.5
5,964,168 - PS417_27655 0.48 +1.4
5,964,201 - PS417_27655 0.51 -0.9
5,964,393 + PS417_27655 0.72 -0.8
5,964,553 - PS417_27655 0.90 +0.7
5,964,624 - -0.5
5,964,662 - +0.1
5,964,662 - +0.5
5,964,681 - -0.3
5,964,787 - +0.3
5,964,966 + PS417_27660 0.12 +1.6
5,965,317 + PS417_27660 0.37 +0.2
5,965,317 + PS417_27660 0.37 -0.2
5,965,318 - PS417_27660 0.37 +0.5
5,965,318 - PS417_27660 0.37 -0.1
5,965,318 - PS417_27660 0.37 +1.8
5,965,434 + PS417_27660 0.45 +0.1
5,965,452 - PS417_27660 0.47 +0.9
5,965,452 - PS417_27660 0.47 -0.4
5,965,452 - PS417_27660 0.47 -0.1
5,965,456 - -0.5
5,965,456 - PS417_27660 0.47 -0.4
5,965,503 + PS417_27660 0.50 -0.0
5,965,548 + PS417_27660 0.53 +0.5
5,966,002 - +1.5
5,966,169 + +0.1
5,966,170 - +0.3
5,966,208 + -0.1
5,966,308 + -0.2
5,966,309 - -0.3

Or see this region's nucleotide sequence