Strain Fitness in Pseudomonas simiae WCS417 around PS417_26395

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26385 and PS417_26390 are separated by 190 nucleotidesPS417_26390 and PS417_26395 overlap by 4 nucleotidesPS417_26395 and PS417_26400 are separated by 19 nucleotidesPS417_26400 and PS417_26405 are separated by 42 nucleotides PS417_26385: PS417_26385 - amino acid ABC transporter substrate-binding protein, at 5,707,585 to 5,708,322 _26385 PS417_26390: PS417_26390 - acyltransferase, at 5,708,513 to 5,708,965 _26390 PS417_26395: PS417_26395 - hypothetical protein, at 5,708,962 to 5,709,258 _26395 PS417_26400: PS417_26400 - metal-dependent hydrolase, at 5,709,278 to 5,709,778 _26400 PS417_26405: PS417_26405 - diguanylate cyclase, at 5,709,821 to 5,711,926 _26405 Position (kb) 5708 5709 5710Strain fitness (log2 ratio) -1 0 1 2 3at 5708.018 kb on + strand, within PS417_26385at 5708.018 kb on + strand, within PS417_26385at 5708.077 kb on + strand, within PS417_26385at 5708.281 kb on + strandat 5708.367 kb on + strandat 5708.368 kb on - strandat 5708.368 kb on - strandat 5708.373 kb on + strandat 5708.374 kb on - strandat 5708.374 kb on - strandat 5708.374 kb on - strandat 5708.384 kb on - strandat 5708.445 kb on - strandat 5708.477 kb on - strandat 5708.479 kb on + strandat 5708.497 kb on - strandat 5708.497 kb on - strandat 5708.497 kb on - strandat 5708.497 kb on - strandat 5708.500 kb on - strandat 5708.700 kb on - strand, within PS417_26390at 5708.883 kb on - strand, within PS417_26390at 5708.885 kb on + strand, within PS417_26390at 5708.922 kb on - strandat 5709.126 kb on + strand, within PS417_26395at 5709.206 kb on + strand, within PS417_26395at 5709.206 kb on + strand, within PS417_26395at 5709.216 kb on - strand, within PS417_26395at 5709.303 kb on + strandat 5709.304 kb on - strandat 5709.313 kb on - strandat 5709.357 kb on + strand, within PS417_26400at 5709.373 kb on - strand, within PS417_26400at 5709.493 kb on + strand, within PS417_26400at 5709.494 kb on - strand, within PS417_26400at 5709.636 kb on + strand, within PS417_26400at 5709.637 kb on - strand, within PS417_26400at 5709.895 kb on + strandat 5709.959 kb on + strandat 5709.994 kb on + strandat 5710.159 kb on + strand, within PS417_26405at 5710.159 kb on + strand, within PS417_26405at 5710.159 kb on + strand, within PS417_26405at 5710.160 kb on - strand, within PS417_26405at 5710.160 kb on - strand, within PS417_26405at 5710.160 kb on - strand, within PS417_26405at 5710.160 kb on - strand, within PS417_26405

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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5,708,018 + PS417_26385 0.59 +0.2
5,708,018 + PS417_26385 0.59 -0.1
5,708,077 + PS417_26385 0.67 -0.2
5,708,281 + -0.0
5,708,367 + -0.4
5,708,368 - -0.2
5,708,368 - +0.2
5,708,373 + -0.4
5,708,374 - +3.2
5,708,374 - +0.6
5,708,374 - -0.8
5,708,384 - -0.5
5,708,445 - +0.1
5,708,477 - +0.0
5,708,479 + +1.0
5,708,497 - +0.3
5,708,497 - +0.0
5,708,497 - -0.8
5,708,497 - +0.3
5,708,500 - -0.1
5,708,700 - PS417_26390 0.41 +0.2
5,708,883 - PS417_26390 0.82 +0.5
5,708,885 + PS417_26390 0.82 -0.0
5,708,922 - +0.6
5,709,126 + PS417_26395 0.55 -0.5
5,709,206 + PS417_26395 0.82 -0.6
5,709,206 + PS417_26395 0.82 -1.1
5,709,216 - PS417_26395 0.86 -0.6
5,709,303 + +0.3
5,709,304 - -0.3
5,709,313 - +0.2
5,709,357 + PS417_26400 0.16 +1.0
5,709,373 - PS417_26400 0.19 -0.4
5,709,493 + PS417_26400 0.43 +2.0
5,709,494 - PS417_26400 0.43 +1.4
5,709,636 + PS417_26400 0.71 -0.2
5,709,637 - PS417_26400 0.72 +0.3
5,709,895 + -0.3
5,709,959 + -0.5
5,709,994 + +0.6
5,710,159 + PS417_26405 0.16 -1.5
5,710,159 + PS417_26405 0.16 -1.1
5,710,159 + PS417_26405 0.16 -0.2
5,710,160 - PS417_26405 0.16 -1.1
5,710,160 - PS417_26405 0.16 +0.1
5,710,160 - PS417_26405 0.16 -0.3
5,710,160 - PS417_26405 0.16 +0.7

Or see this region's nucleotide sequence