Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16845 and PS417_16850 overlap by 4 nucleotides PS417_16850 and PS417_16855 overlap by 4 nucleotides PS417_16855 and PS417_16860 are separated by 126 nucleotides PS417_16860 and PS417_16865 are separated by 101 nucleotides PS417_16865 and PS417_16870 overlap by 4 nucleotides
PS417_16845: PS417_16845 - monovalent cation/H+ antiporter subunit E, at 3,675,555 to 3,676,043
_16845
PS417_16850: PS417_16850 - cation:proton antiporter, at 3,676,040 to 3,676,318
_16850
PS417_16855: PS417_16855 - cation:proton antiporter, at 3,676,315 to 3,676,653
_16855
PS417_16860: PS417_16860 - diadenosine tetraphosphate hydrolase, at 3,676,780 to 3,677,238
_16860
PS417_16865: PS417_16865 - HxlR family transcriptional regulator, at 3,677,340 to 3,677,669
_16865
PS417_16870: PS417_16870 - short-chain dehydrogenase, at 3,677,666 to 3,678,448
_16870
Position (kb)
3676
3677
3678 Strain fitness (log2 ratio)
-1
0
1
2 at 3675.914 kb on + strand at 3676.011 kb on + strand at 3676.011 kb on + strand at 3676.011 kb on + strand at 3676.012 kb on - strand at 3676.012 kb on - strand at 3676.163 kb on + strand, within PS417_16850 at 3676.164 kb on - strand, within PS417_16850 at 3676.226 kb on + strand, within PS417_16850 at 3676.358 kb on + strand, within PS417_16855 at 3676.577 kb on + strand, within PS417_16855 at 3676.723 kb on + strand at 3676.724 kb on - strand at 3676.778 kb on + strand at 3676.842 kb on - strand at 3676.857 kb on + strand, within PS417_16860 at 3676.857 kb on + strand, within PS417_16860 at 3676.860 kb on - strand, within PS417_16860 at 3676.860 kb on - strand, within PS417_16860 at 3676.915 kb on - strand, within PS417_16860 at 3677.094 kb on - strand, within PS417_16860 at 3677.167 kb on - strand, within PS417_16860 at 3677.212 kb on - strand at 3677.274 kb on - strand at 3677.274 kb on - strand at 3677.274 kb on - strand at 3677.301 kb on + strand at 3677.335 kb on - strand at 3677.353 kb on - strand at 3677.586 kb on + strand, within PS417_16865 at 3677.700 kb on + strand at 3677.994 kb on + strand, within PS417_16870 at 3678.197 kb on + strand, within PS417_16870
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 3,675,914 + -0.9 3,676,011 + -0.6 3,676,011 + -0.3 3,676,011 + +0.1 3,676,012 - -0.4 3,676,012 - +0.3 3,676,163 + PS417_16850 0.44 -0.2 3,676,164 - PS417_16850 0.44 -0.1 3,676,226 + PS417_16850 0.67 -1.1 3,676,358 + PS417_16855 0.13 -0.5 3,676,577 + PS417_16855 0.77 -0.2 3,676,723 + +0.4 3,676,724 - +0.7 3,676,778 + +0.1 3,676,842 - -0.6 3,676,857 + PS417_16860 0.17 -0.5 3,676,857 + PS417_16860 0.17 -1.1 3,676,860 - PS417_16860 0.17 +1.0 3,676,860 - PS417_16860 0.17 +1.8 3,676,915 - PS417_16860 0.29 -0.4 3,677,094 - PS417_16860 0.68 +0.4 3,677,167 - PS417_16860 0.84 +0.3 3,677,212 - +0.1 3,677,274 - +0.6 3,677,274 - -0.3 3,677,274 - +0.7 3,677,301 + -0.4 3,677,335 - -0.1 3,677,353 - -0.1 3,677,586 + PS417_16865 0.75 +0.3 3,677,700 + +0.1 3,677,994 + PS417_16870 0.42 -0.1 3,678,197 + PS417_16870 0.68 +0.3
Or see this region's nucleotide sequence