Strain Fitness in Pseudomonas simiae WCS417 around PS417_07190

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07180 and PS417_07185 are separated by 83 nucleotidesPS417_07185 and PS417_07190 are separated by 352 nucleotidesPS417_07190 and PS417_07195 are separated by 282 nucleotidesPS417_07195 and PS417_07200 are separated by 50 nucleotides PS417_07180: PS417_07180 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,585,966 to 1,586,679 _07180 PS417_07185: PS417_07185 - tRNA-Ser, at 1,586,763 to 1,586,852 _07185 PS417_07190: PS417_07190 - MFS transporter, at 1,587,205 to 1,588,431 _07190 PS417_07195: PS417_07195 - hypothetical protein, at 1,588,714 to 1,588,968 _07195 PS417_07200: PS417_07200 - LysR family transcriptional regulator, at 1,589,019 to 1,589,984 _07200 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -1 0 1 2 3at 1586.698 kb on - strandat 1586.950 kb on + strandat 1586.962 kb on + strandat 1586.962 kb on + strandat 1586.963 kb on - strandat 1586.963 kb on - strandat 1587.194 kb on + strandat 1587.194 kb on + strandat 1587.194 kb on + strandat 1587.195 kb on - strandat 1587.228 kb on + strandat 1587.228 kb on + strandat 1587.229 kb on - strandat 1587.229 kb on - strandat 1587.229 kb on - strandat 1587.361 kb on - strand, within PS417_07190at 1587.566 kb on - strand, within PS417_07190at 1587.573 kb on - strand, within PS417_07190at 1587.704 kb on + strand, within PS417_07190at 1587.705 kb on - strand, within PS417_07190at 1587.916 kb on + strand, within PS417_07190at 1587.943 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.389 kb on + strandat 1588.390 kb on - strandat 1588.390 kb on - strandat 1588.390 kb on - strandat 1588.486 kb on - strandat 1588.486 kb on - strandat 1588.498 kb on + strandat 1588.541 kb on + strandat 1588.541 kb on + strandat 1588.541 kb on + strandat 1588.542 kb on - strandat 1588.624 kb on + strandat 1588.657 kb on + strandat 1588.660 kb on + strandat 1588.660 kb on + strandat 1588.748 kb on + strand, within PS417_07195at 1588.748 kb on + strand, within PS417_07195at 1588.749 kb on - strand, within PS417_07195at 1588.900 kb on + strand, within PS417_07195at 1588.900 kb on + strand, within PS417_07195at 1588.901 kb on - strand, within PS417_07195at 1588.901 kb on - strand, within PS417_07195at 1588.970 kb on + strandat 1589.031 kb on - strandat 1589.078 kb on + strandat 1589.124 kb on + strand, within PS417_07200at 1589.124 kb on + strand, within PS417_07200at 1589.124 kb on + strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200at 1589.125 kb on - strand, within PS417_07200

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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1,586,698 - -1.0
1,586,950 + -0.3
1,586,962 + -0.1
1,586,962 + -0.8
1,586,963 - +0.0
1,586,963 - +0.1
1,587,194 + -0.8
1,587,194 + +0.3
1,587,194 + +0.5
1,587,195 - -0.3
1,587,228 + +0.6
1,587,228 + +0.5
1,587,229 - +0.1
1,587,229 - -1.1
1,587,229 - -0.5
1,587,361 - PS417_07190 0.13 +0.8
1,587,566 - PS417_07190 0.29 +0.2
1,587,573 - PS417_07190 0.30 +1.5
1,587,704 + PS417_07190 0.41 +0.5
1,587,705 - PS417_07190 0.41 +3.2
1,587,916 + PS417_07190 0.58 +0.4
1,587,943 + +1.3
1,588,389 + +1.0
1,588,389 + +0.0
1,588,389 + +0.0
1,588,389 + +0.3
1,588,390 - +0.0
1,588,390 - -0.8
1,588,390 - -1.7
1,588,486 - +0.5
1,588,486 - -0.1
1,588,498 + -0.4
1,588,541 + -0.4
1,588,541 + +0.3
1,588,541 + +0.2
1,588,542 - -0.5
1,588,624 + -0.5
1,588,657 + -0.4
1,588,660 + -0.3
1,588,660 + +0.0
1,588,748 + PS417_07195 0.13 +0.7
1,588,748 + PS417_07195 0.13 -0.5
1,588,749 - PS417_07195 0.14 +0.7
1,588,900 + PS417_07195 0.73 -0.4
1,588,900 + PS417_07195 0.73 -0.5
1,588,901 - PS417_07195 0.73 +0.3
1,588,901 - PS417_07195 0.73 -0.1
1,588,970 + -0.0
1,589,031 - +0.3
1,589,078 + +0.1
1,589,124 + PS417_07200 0.11 -0.1
1,589,124 + PS417_07200 0.11 +0.2
1,589,124 + PS417_07200 0.11 +0.1
1,589,125 - PS417_07200 0.11 -0.4
1,589,125 - PS417_07200 0.11 +0.1
1,589,125 - PS417_07200 0.11 +0.0
1,589,125 - PS417_07200 0.11 +0.1

Or see this region's nucleotide sequence