Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17360 and PS417_17365 are separated by 3 nucleotides PS417_17365 and PS417_17370 are separated by 51 nucleotides PS417_17370 and PS417_17375 are separated by 64 nucleotides PS417_17375 and PS417_17380 are separated by 1 nucleotides
PS417_17360: PS417_17360 - D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) , at 3,792,587 to 3,793,411
_17360
PS417_17365: PS417_17365 - galactaro-1,5-lactonase (from data) , at 3,793,415 to 3,794,290
_17365
PS417_17370: PS417_17370 - C4-dicarboxylate ABC transporter, at 3,794,342 to 3,795,304
_17370
PS417_17375: PS417_17375 - C4-dicarboxylate ABC transporter, at 3,795,369 to 3,795,896
_17375
PS417_17380: PS417_17380 - membrane protein, at 3,795,898 to 3,797,178
_17380
Position (kb)
3794
3795
3796 Strain fitness (log2 ratio)
-2
-1
0
1 at 3793.901 kb on + strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.288 kb on + strand at 3794.312 kb on - strand at 3794.320 kb on - strand at 3794.787 kb on - strand, within PS417_17370 at 3794.842 kb on - strand, within PS417_17370 at 3795.005 kb on + strand, within PS417_17370 at 3795.006 kb on - strand, within PS417_17370 at 3795.008 kb on + strand, within PS417_17370 at 3795.009 kb on - strand, within PS417_17370 at 3795.224 kb on + strand at 3795.224 kb on + strand at 3795.224 kb on + strand at 3795.225 kb on - strand at 3795.225 kb on - strand at 3795.225 kb on - strand at 3795.406 kb on - strand at 3795.416 kb on + strand at 3795.571 kb on - strand, within PS417_17375 at 3795.768 kb on + strand, within PS417_17375 at 3795.768 kb on + strand, within PS417_17375 at 3795.769 kb on - strand, within PS417_17375
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 3,793,901 + PS417_17365 0.55 -0.2 3,793,902 - PS417_17365 0.56 +0.2 3,793,902 - PS417_17365 0.56 +0.7 3,793,902 - PS417_17365 0.56 -0.4 3,794,127 + PS417_17365 0.81 +0.8 3,794,127 + PS417_17365 0.81 -0.0 3,794,288 + -0.4 3,794,312 - -1.5 3,794,320 - +0.5 3,794,787 - PS417_17370 0.46 -0.1 3,794,842 - PS417_17370 0.52 -0.2 3,795,005 + PS417_17370 0.69 +1.0 3,795,006 - PS417_17370 0.69 +0.2 3,795,008 + PS417_17370 0.69 +0.7 3,795,009 - PS417_17370 0.69 +0.4 3,795,224 + -0.2 3,795,224 + -0.4 3,795,224 + +1.0 3,795,225 - +0.4 3,795,225 - +0.4 3,795,225 - -0.1 3,795,406 - -0.3 3,795,416 + +0.7 3,795,571 - PS417_17375 0.38 -0.0 3,795,768 + PS417_17375 0.76 -0.1 3,795,768 + PS417_17375 0.76 -0.1 3,795,769 - PS417_17375 0.76 -1.9
Or see this region's nucleotide sequence