Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11825 and PS417_11830 are separated by 335 nucleotides PS417_11830 and PS417_11835 are separated by 117 nucleotides
PS417_11820: PS417_11820 - histidine kinase, at 2,571,640 to 2,573,031
_11820
PS417_11825: PS417_11825 - transcriptional regulator, at 2,573,009 to 2,573,692
_11825
PS417_11830: PS417_11830 - membrane protein, at 2,574,028 to 2,574,933
_11830
PS417_11835: PS417_11835 - MFS transporter, at 2,575,051 to 2,576,262
_11835
Position (kb)
2574
2575 Strain fitness (log2 ratio)
-1
0
1 at 2573.046 kb on - strand at 2573.046 kb on - strand at 2573.220 kb on + strand at 2573.398 kb on - strand, within PS417_11825 at 2573.609 kb on + strand, within PS417_11825 at 2573.610 kb on - strand, within PS417_11825 at 2573.610 kb on - strand, within PS417_11825 at 2573.683 kb on + strand at 2573.696 kb on - strand at 2573.699 kb on - strand at 2573.752 kb on - strand at 2573.994 kb on + strand at 2573.995 kb on - strand at 2573.995 kb on - strand at 2574.325 kb on + strand, within PS417_11830 at 2574.526 kb on + strand, within PS417_11830 at 2574.526 kb on + strand, within PS417_11830 at 2574.656 kb on - strand, within PS417_11830 at 2574.727 kb on + strand, within PS417_11830 at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2575.071 kb on + strand at 2575.299 kb on + strand, within PS417_11835 at 2575.321 kb on + strand, within PS417_11835 at 2575.515 kb on - strand, within PS417_11835 at 2575.570 kb on - strand, within PS417_11835 at 2575.589 kb on + strand, within PS417_11835 at 2575.718 kb on + strand, within PS417_11835 at 2575.719 kb on - strand, within PS417_11835 at 2575.887 kb on - strand, within PS417_11835
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 2,573,046 - -0.1 2,573,046 - +1.1 2,573,220 + +0.5 2,573,398 - PS417_11825 0.57 +0.4 2,573,609 + PS417_11825 0.88 +1.1 2,573,610 - PS417_11825 0.88 -1.1 2,573,610 - PS417_11825 0.88 -0.2 2,573,683 + -0.1 2,573,696 - +0.1 2,573,699 - -0.0 2,573,752 - -0.5 2,573,994 + +0.1 2,573,995 - -1.0 2,573,995 - -0.0 2,574,325 + PS417_11830 0.33 -0.7 2,574,526 + PS417_11830 0.55 -1.2 2,574,526 + PS417_11830 0.55 -0.1 2,574,656 - PS417_11830 0.69 +1.3 2,574,727 + PS417_11830 0.77 -1.5 2,574,905 - -0.7 2,574,905 - -0.7 2,574,905 - +0.7 2,574,905 - -0.1 2,574,905 - -0.5 2,574,905 - +0.3 2,574,905 - +0.2 2,575,071 + -0.2 2,575,299 + PS417_11835 0.20 -0.2 2,575,321 + PS417_11835 0.22 -0.9 2,575,515 - PS417_11835 0.38 -0.4 2,575,570 - PS417_11835 0.43 -1.6 2,575,589 + PS417_11835 0.44 -0.5 2,575,718 + PS417_11835 0.55 -0.2 2,575,719 - PS417_11835 0.55 +1.5 2,575,887 - PS417_11835 0.69 -0.6
Or see this region's nucleotide sequence