Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11715 and PS417_11720 are separated by 34 nucleotides PS417_11720 and PS417_11725 are separated by 18 nucleotides
PS417_11715: PS417_11715 - chromophore maturation protein PvdO, at 2,547,087 to 2,547,947
_11715
PS417_11720: PS417_11720 - class V aminotransferase, at 2,547,982 to 2,549,253
_11720
PS417_11725: PS417_11725 - peptidase M19, at 2,549,272 to 2,550,621
_11725
Position (kb)
2547
2548
2549
2550 Strain fitness (log2 ratio)
-1
0
1 at 2546.996 kb on - strand at 2547.054 kb on + strand at 2547.086 kb on - strand at 2547.089 kb on - strand at 2547.208 kb on + strand, within PS417_11715 at 2547.263 kb on - strand, within PS417_11715 at 2547.296 kb on - strand, within PS417_11715 at 2547.367 kb on + strand at 2547.385 kb on + strand, within PS417_11715 at 2547.385 kb on + strand, within PS417_11715 at 2547.385 kb on + strand, within PS417_11715 at 2547.386 kb on - strand, within PS417_11715 at 2547.472 kb on + strand, within PS417_11715 at 2547.538 kb on + strand, within PS417_11715 at 2547.674 kb on - strand, within PS417_11715 at 2548.115 kb on + strand, within PS417_11720 at 2548.557 kb on - strand, within PS417_11720 at 2548.814 kb on + strand, within PS417_11720 at 2548.815 kb on - strand, within PS417_11720 at 2549.215 kb on + strand at 2549.216 kb on - strand at 2549.216 kb on - strand at 2550.033 kb on - strand, within PS417_11725 at 2550.033 kb on - strand, within PS417_11725 at 2550.033 kb on - strand, within PS417_11725 at 2550.176 kb on + strand, within PS417_11725 at 2550.210 kb on - strand, within PS417_11725 at 2550.231 kb on - strand, within PS417_11725
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 2,546,996 - -0.6 2,547,054 + -0.1 2,547,086 - -0.2 2,547,089 - +1.0 2,547,208 + PS417_11715 0.14 -0.4 2,547,263 - PS417_11715 0.20 -0.0 2,547,296 - PS417_11715 0.24 -0.4 2,547,367 + +0.6 2,547,385 + PS417_11715 0.35 -0.8 2,547,385 + PS417_11715 0.35 -0.6 2,547,385 + PS417_11715 0.35 -0.4 2,547,386 - PS417_11715 0.35 -1.3 2,547,472 + PS417_11715 0.45 +1.6 2,547,538 + PS417_11715 0.52 -0.3 2,547,674 - PS417_11715 0.68 +0.3 2,548,115 + PS417_11720 0.10 -0.9 2,548,557 - PS417_11720 0.45 -0.2 2,548,814 + PS417_11720 0.65 -0.3 2,548,815 - PS417_11720 0.65 -0.9 2,549,215 + +0.2 2,549,216 - +0.1 2,549,216 - +0.6 2,550,033 - PS417_11725 0.56 -1.7 2,550,033 - PS417_11725 0.56 -0.1 2,550,033 - PS417_11725 0.56 -0.7 2,550,176 + PS417_11725 0.67 +0.5 2,550,210 - PS417_11725 0.69 +0.4 2,550,231 - PS417_11725 0.71 +0.1
Or see this region's nucleotide sequence