Strain Fitness in Pseudomonas simiae WCS417 around PS417_10550

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10540 and PS417_10545 are separated by 8 nucleotidesPS417_10545 and PS417_10550 are separated by 131 nucleotidesPS417_10550 and PS417_10555 are separated by 227 nucleotides PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697 _10545 PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778 _10550 PS417_10555: PS417_10555 - major facilitator transporter, at 2,252,006 to 2,253,631 _10555 Position (kb) 2249 2250 2251 2252Strain fitness (log2 ratio) -2 -1 0 1at 2249.082 kb on + strand, within PS417_10540at 2249.082 kb on + strand, within PS417_10540at 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.228 kb on - strandat 2249.273 kb on + strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.431 kb on - strand, within PS417_10545at 2249.741 kb on - strandat 2249.751 kb on - strandat 2249.894 kb on + strandat 2249.894 kb on + strandat 2250.299 kb on + strand, within PS417_10550at 2250.542 kb on - strand, within PS417_10550at 2250.592 kb on + strand, within PS417_10550at 2250.714 kb on - strand, within PS417_10550at 2250.823 kb on + strand, within PS417_10550at 2250.824 kb on - strand, within PS417_10550at 2251.160 kb on + strand, within PS417_10550at 2251.161 kb on - strand, within PS417_10550at 2251.322 kb on - strand, within PS417_10550at 2251.588 kb on - strandat 2251.612 kb on + strandat 2251.613 kb on - strandat 2251.624 kb on + strandat 2251.768 kb on + strandat 2251.845 kb on - strandat 2251.859 kb on - strandat 2252.014 kb on + strandat 2252.014 kb on + strandat 2252.122 kb on - strandat 2252.256 kb on + strand, within PS417_10555at 2252.294 kb on + strand, within PS417_10555at 2252.611 kb on + strand, within PS417_10555at 2252.612 kb on - strand, within PS417_10555at 2252.643 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,249,082 + PS417_10540 0.80 -0.3
2,249,082 + PS417_10540 0.80 -0.0
2,249,227 + -0.2
2,249,227 + -1.2
2,249,227 + -0.3
2,249,227 + +0.5
2,249,228 - -0.4
2,249,273 + -0.1
2,249,274 - -0.2
2,249,274 - +0.0
2,249,274 - -0.5
2,249,274 - -1.1
2,249,274 - -0.2
2,249,431 - PS417_10545 0.39 -0.7
2,249,741 - -0.9
2,249,751 - -0.0
2,249,894 + +0.8
2,249,894 + -0.1
2,250,299 + PS417_10550 0.24 -0.3
2,250,542 - PS417_10550 0.37 -0.3
2,250,592 + PS417_10550 0.39 -0.5
2,250,714 - PS417_10550 0.45 -0.4
2,250,823 + PS417_10550 0.51 -1.8
2,250,824 - PS417_10550 0.51 -0.6
2,251,160 + PS417_10550 0.68 -0.5
2,251,161 - PS417_10550 0.68 -0.8
2,251,322 - PS417_10550 0.77 -0.6
2,251,588 - -0.0
2,251,612 + +1.0
2,251,613 - -0.3
2,251,624 + -0.1
2,251,768 + -0.0
2,251,845 - +0.7
2,251,859 - +0.8
2,252,014 + +0.8
2,252,014 + +0.1
2,252,122 - -1.2
2,252,256 + PS417_10555 0.15 -0.4
2,252,294 + PS417_10555 0.18 +0.3
2,252,611 + PS417_10555 0.37 +0.3
2,252,612 - PS417_10555 0.37 +1.3
2,252,643 + -0.0

Or see this region's nucleotide sequence