Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10540 and PS417_10545 are separated by 8 nucleotides PS417_10545 and PS417_10550 are separated by 131 nucleotides PS417_10550 and PS417_10555 are separated by 227 nucleotides
PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248
_10540
PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697
_10545
PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778
_10550
PS417_10555: PS417_10555 - major facilitator transporter, at 2,252,006 to 2,253,631
_10555
Position (kb)
2249
2250
2251
2252 Strain fitness (log2 ratio)
-2
-1
0
1 at 2249.082 kb on + strand, within PS417_10540 at 2249.082 kb on + strand, within PS417_10540 at 2249.227 kb on + strand at 2249.227 kb on + strand at 2249.227 kb on + strand at 2249.227 kb on + strand at 2249.228 kb on - strand at 2249.273 kb on + strand at 2249.274 kb on - strand at 2249.274 kb on - strand at 2249.274 kb on - strand at 2249.274 kb on - strand at 2249.274 kb on - strand at 2249.431 kb on - strand, within PS417_10545 at 2249.741 kb on - strand at 2249.751 kb on - strand at 2249.894 kb on + strand at 2249.894 kb on + strand at 2250.299 kb on + strand, within PS417_10550 at 2250.542 kb on - strand, within PS417_10550 at 2250.592 kb on + strand, within PS417_10550 at 2250.714 kb on - strand, within PS417_10550 at 2250.823 kb on + strand, within PS417_10550 at 2250.824 kb on - strand, within PS417_10550 at 2251.160 kb on + strand, within PS417_10550 at 2251.161 kb on - strand, within PS417_10550 at 2251.322 kb on - strand, within PS417_10550 at 2251.588 kb on - strand at 2251.612 kb on + strand at 2251.613 kb on - strand at 2251.624 kb on + strand at 2251.768 kb on + strand at 2251.845 kb on - strand at 2251.859 kb on - strand at 2252.014 kb on + strand at 2252.014 kb on + strand at 2252.122 kb on - strand at 2252.256 kb on + strand, within PS417_10555 at 2252.294 kb on + strand, within PS417_10555 at 2252.611 kb on + strand, within PS417_10555 at 2252.612 kb on - strand, within PS417_10555 at 2252.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 2,249,082 + PS417_10540 0.80 -0.3 2,249,082 + PS417_10540 0.80 -0.0 2,249,227 + -0.2 2,249,227 + -1.2 2,249,227 + -0.3 2,249,227 + +0.5 2,249,228 - -0.4 2,249,273 + -0.1 2,249,274 - -0.2 2,249,274 - +0.0 2,249,274 - -0.5 2,249,274 - -1.1 2,249,274 - -0.2 2,249,431 - PS417_10545 0.39 -0.7 2,249,741 - -0.9 2,249,751 - -0.0 2,249,894 + +0.8 2,249,894 + -0.1 2,250,299 + PS417_10550 0.24 -0.3 2,250,542 - PS417_10550 0.37 -0.3 2,250,592 + PS417_10550 0.39 -0.5 2,250,714 - PS417_10550 0.45 -0.4 2,250,823 + PS417_10550 0.51 -1.8 2,250,824 - PS417_10550 0.51 -0.6 2,251,160 + PS417_10550 0.68 -0.5 2,251,161 - PS417_10550 0.68 -0.8 2,251,322 - PS417_10550 0.77 -0.6 2,251,588 - -0.0 2,251,612 + +1.0 2,251,613 - -0.3 2,251,624 + -0.1 2,251,768 + -0.0 2,251,845 - +0.7 2,251,859 - +0.8 2,252,014 + +0.8 2,252,014 + +0.1 2,252,122 - -1.2 2,252,256 + PS417_10555 0.15 -0.4 2,252,294 + PS417_10555 0.18 +0.3 2,252,611 + PS417_10555 0.37 +0.3 2,252,612 - PS417_10555 0.37 +1.3 2,252,643 + -0.0
Or see this region's nucleotide sequence