Strain Fitness in Pseudomonas simiae WCS417 around PS417_08295

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08290 and PS417_08295 are separated by 64 nucleotidesPS417_08295 and PS417_08300 are separated by 146 nucleotides PS417_08290: PS417_08290 - potassium-transporting ATPase subunit B, at 1,814,422 to 1,816,479 _08290 PS417_08295: PS417_08295 - ATPase, at 1,816,544 to 1,817,089 _08295 PS417_08300: PS417_08300 - histidine kinase, at 1,817,236 to 1,819,887 _08300 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2at 1815.593 kb on - strand, within PS417_08290at 1816.189 kb on + strand, within PS417_08290at 1816.190 kb on - strand, within PS417_08290at 1816.225 kb on + strand, within PS417_08290at 1816.454 kb on + strandat 1816.454 kb on + strandat 1816.454 kb on + strandat 1816.795 kb on + strand, within PS417_08295at 1816.898 kb on - strand, within PS417_08295at 1817.128 kb on - strandat 1817.128 kb on - strandat 1817.139 kb on + strandat 1817.139 kb on + strandat 1817.139 kb on + strandat 1817.140 kb on - strandat 1817.140 kb on - strandat 1817.140 kb on - strandat 1817.140 kb on - strandat 1817.146 kb on + strandat 1817.153 kb on - strandat 1817.208 kb on - strandat 1817.215 kb on + strandat 1817.307 kb on - strandat 1817.341 kb on + strandat 1817.450 kb on + strandat 1817.639 kb on + strand, within PS417_08300at 1817.639 kb on + strand, within PS417_08300at 1817.640 kb on - strand, within PS417_08300at 1817.816 kb on - strand, within PS417_08300at 1817.816 kb on - strand, within PS417_08300

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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1,815,593 - PS417_08290 0.57 +1.6
1,816,189 + PS417_08290 0.86 +0.5
1,816,190 - PS417_08290 0.86 +0.5
1,816,225 + PS417_08290 0.88 -0.8
1,816,454 + +1.9
1,816,454 + -0.0
1,816,454 + +0.5
1,816,795 + PS417_08295 0.46 -0.3
1,816,898 - PS417_08295 0.65 -1.1
1,817,128 - +0.1
1,817,128 - +0.2
1,817,139 + +0.0
1,817,139 + +1.7
1,817,139 + -1.0
1,817,140 - -0.1
1,817,140 - -0.1
1,817,140 - -0.1
1,817,140 - -0.0
1,817,146 + +0.1
1,817,153 - -0.9
1,817,208 - -0.9
1,817,215 + -0.2
1,817,307 - -2.1
1,817,341 + +0.2
1,817,450 + -1.4
1,817,639 + PS417_08300 0.15 +0.1
1,817,639 + PS417_08300 0.15 +0.1
1,817,640 - PS417_08300 0.15 -0.2
1,817,816 - PS417_08300 0.22 -1.5
1,817,816 - PS417_08300 0.22 -0.7

Or see this region's nucleotide sequence