Strain Fitness in Pseudomonas simiae WCS417 around PS417_27815

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27805 and PS417_27810 are separated by 22 nucleotidesPS417_27810 and PS417_27815 are separated by 185 nucleotidesPS417_27815 and PS417_27820 are separated by 10 nucleotidesPS417_27820 and PS417_27825 are separated by 167 nucleotides PS417_27805: PS417_27805 - orotate phosphoribosyltransferase, at 5,995,795 to 5,996,166 _27805 PS417_27810: PS417_27810 - ribonuclease PH, at 5,996,189 to 5,996,911 _27810 PS417_27815: PS417_27815 - hypothetical protein, at 5,997,097 to 5,997,960 _27815 PS417_27820: PS417_27820 - guanylate kinase, at 5,997,971 to 5,998,591 _27820 PS417_27825: PS417_27825 - DNA-directed RNA polymerase subunit omega, at 5,998,759 to 5,999,022 _27825 Position (kb) 5997 5998Strain fitness (log2 ratio) -1 0 1 2at 5996.376 kb on + strand, within PS417_27810at 5996.376 kb on + strand, within PS417_27810at 5996.377 kb on - strand, within PS417_27810at 5996.377 kb on - strand, within PS417_27810at 5996.377 kb on - strand, within PS417_27810at 5996.406 kb on + strand, within PS417_27810at 5996.406 kb on + strand, within PS417_27810at 5996.406 kb on + strand, within PS417_27810at 5996.406 kb on + strand, within PS417_27810at 5996.407 kb on - strandat 5996.407 kb on - strand, within PS417_27810at 5996.407 kb on - strand, within PS417_27810at 5996.407 kb on - strand, within PS417_27810at 5996.407 kb on - strand, within PS417_27810at 5996.407 kb on - strand, within PS417_27810at 5996.571 kb on + strand, within PS417_27810at 5996.571 kb on + strand, within PS417_27810at 5996.571 kb on + strand, within PS417_27810at 5996.571 kb on + strand, within PS417_27810at 5996.572 kb on - strand, within PS417_27810at 5996.572 kb on - strand, within PS417_27810at 5996.572 kb on - strand, within PS417_27810at 5996.755 kb on + strand, within PS417_27810at 5996.825 kb on + strand, within PS417_27810at 5996.851 kb on - strandat 5996.851 kb on - strandat 5996.952 kb on + strandat 5996.952 kb on + strandat 5996.953 kb on - strandat 5996.953 kb on - strandat 5996.954 kb on + strandat 5996.954 kb on + strandat 5996.954 kb on + strandat 5996.954 kb on + strandat 5996.954 kb on + strandat 5996.955 kb on - strandat 5996.955 kb on - strandat 5996.955 kb on - strandat 5996.984 kb on - strandat 5997.036 kb on - strandat 5997.053 kb on + strandat 5997.264 kb on + strand, within PS417_27815at 5997.264 kb on + strandat 5997.858 kb on + strand, within PS417_27815at 5997.858 kb on + strand, within PS417_27815at 5998.623 kb on + strandat 5998.623 kb on + strandat 5998.623 kb on + strandat 5998.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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5,996,376 + PS417_27810 0.26 -0.3
5,996,376 + PS417_27810 0.26 -0.5
5,996,377 - PS417_27810 0.26 -0.5
5,996,377 - PS417_27810 0.26 -0.8
5,996,377 - PS417_27810 0.26 -0.1
5,996,406 + PS417_27810 0.30 -0.4
5,996,406 + PS417_27810 0.30 -0.2
5,996,406 + PS417_27810 0.30 -0.5
5,996,406 + PS417_27810 0.30 -0.1
5,996,407 - +0.6
5,996,407 - PS417_27810 0.30 -0.1
5,996,407 - PS417_27810 0.30 -0.5
5,996,407 - PS417_27810 0.30 -0.3
5,996,407 - PS417_27810 0.30 -1.4
5,996,407 - PS417_27810 0.30 +0.4
5,996,571 + PS417_27810 0.53 +0.1
5,996,571 + PS417_27810 0.53 -1.3
5,996,571 + PS417_27810 0.53 -0.7
5,996,571 + PS417_27810 0.53 -0.7
5,996,572 - PS417_27810 0.53 +0.1
5,996,572 - PS417_27810 0.53 -1.1
5,996,572 - PS417_27810 0.53 -0.1
5,996,755 + PS417_27810 0.78 -0.4
5,996,825 + PS417_27810 0.88 -0.4
5,996,851 - -0.4
5,996,851 - +0.2
5,996,952 + -0.7
5,996,952 + -0.4
5,996,953 - -0.2
5,996,953 - -0.2
5,996,954 + +0.8
5,996,954 + -0.3
5,996,954 + +1.1
5,996,954 + +0.2
5,996,954 + -0.3
5,996,955 - +0.6
5,996,955 - +0.4
5,996,955 - -0.3
5,996,984 - +2.2
5,997,036 - -0.4
5,997,053 + -0.0
5,997,264 + PS417_27815 0.19 -0.0
5,997,264 + -0.8
5,997,858 + PS417_27815 0.88 +1.1
5,997,858 + PS417_27815 0.88 -1.0
5,998,623 + -0.2
5,998,623 + -0.3
5,998,623 + -0.3
5,998,624 - -0.0

Or see this region's nucleotide sequence