Strain Fitness in Pseudomonas simiae WCS417 around PS417_25155

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25145 and PS417_25155 are separated by 167 nucleotidesPS417_25155 and PS417_25160 are separated by 708 nucleotides PS417_25145: PS417_25145 - hypothetical protein, at 5,452,012 to 5,452,275 _25145 PS417_25155: PS417_25155 - hypothetical protein, at 5,452,443 to 5,452,703 _25155 PS417_25160: PS417_25160 - hypothetical protein, at 5,453,412 to 5,453,945 _25160 Position (kb) 5452 5453Strain fitness (log2 ratio) -1 0 1at 5451.621 kb on + strandat 5451.662 kb on - strandat 5451.765 kb on + strandat 5451.767 kb on + strandat 5451.767 kb on + strandat 5451.767 kb on + strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.768 kb on - strandat 5451.809 kb on + strandat 5451.842 kb on + strandat 5451.842 kb on + strandat 5451.879 kb on + strandat 5451.913 kb on + strandat 5451.913 kb on + strandat 5452.087 kb on - strand, within PS417_25145at 5452.115 kb on + strand, within PS417_25145at 5452.289 kb on + strandat 5452.357 kb on - strandat 5452.377 kb on + strandat 5452.378 kb on - strandat 5452.518 kb on - strand, within PS417_25155at 5452.518 kb on - strand, within PS417_25155at 5452.694 kb on - strandat 5452.795 kb on + strandat 5452.868 kb on + strandat 5452.994 kb on + strandat 5452.995 kb on - strandat 5453.145 kb on + strandat 5453.279 kb on + strandat 5453.295 kb on + strandat 5453.296 kb on - strandat 5453.302 kb on - strandat 5453.330 kb on - strandat 5453.475 kb on + strand, within PS417_25160at 5453.488 kb on + strand, within PS417_25160at 5453.552 kb on + strand, within PS417_25160at 5453.618 kb on + strand, within PS417_25160at 5453.618 kb on + strand, within PS417_25160at 5453.646 kb on + strand, within PS417_25160at 5453.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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5,451,621 + -0.0
5,451,662 - -0.0
5,451,765 + +0.1
5,451,767 + +0.3
5,451,767 + +1.1
5,451,767 + -0.4
5,451,768 - -0.2
5,451,768 - +0.9
5,451,768 - +0.2
5,451,768 - -0.1
5,451,768 - -0.8
5,451,768 - +0.5
5,451,768 - +0.4
5,451,809 + -0.1
5,451,842 + -0.4
5,451,842 + -0.3
5,451,879 + -0.1
5,451,913 + +0.0
5,451,913 + -0.3
5,452,087 - PS417_25145 0.28 +1.5
5,452,115 + PS417_25145 0.39 -0.2
5,452,289 + +0.1
5,452,357 - +0.0
5,452,377 + -0.0
5,452,378 - +0.0
5,452,518 - PS417_25155 0.29 -0.1
5,452,518 - PS417_25155 0.29 -1.1
5,452,694 - +0.1
5,452,795 + -0.7
5,452,868 + -0.5
5,452,994 + -0.4
5,452,995 - -0.0
5,453,145 + -0.7
5,453,279 + +0.3
5,453,295 + -0.4
5,453,296 - +0.4
5,453,302 - +0.9
5,453,330 - +1.3
5,453,475 + PS417_25160 0.12 -0.2
5,453,488 + PS417_25160 0.14 +0.7
5,453,552 + PS417_25160 0.26 -1.4
5,453,618 + PS417_25160 0.39 +0.0
5,453,618 + PS417_25160 0.39 -0.1
5,453,646 + PS417_25160 0.44 -0.2
5,453,672 - -0.1

Or see this region's nucleotide sequence