Strain Fitness in Pseudomonas simiae WCS417 around PS417_22515

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22505 and PS417_22510 are separated by 135 nucleotidesPS417_22510 and PS417_22515 are separated by 123 nucleotidesPS417_22515 and PS417_22520 are separated by 46 nucleotides PS417_22505: PS417_22505 - mechanosensitive ion channel protein MscS, at 4,871,376 to 4,872,218 _22505 PS417_22510: PS417_22510 - nucleotide-binding protein, at 4,872,354 to 4,872,839 _22510 PS417_22515: PS417_22515 - 2-dehydropantoate 2-reductase, at 4,872,963 to 4,873,880 _22515 PS417_22520: PS417_22520 - histidine kinase, at 4,873,927 to 4,875,963 _22520 Position (kb) 4872 4873 4874Strain fitness (log2 ratio) -1 0 1 2 3at 4872.020 kb on + strand, within PS417_22505at 4872.050 kb on + strand, within PS417_22505at 4872.087 kb on + strand, within PS417_22505at 4872.087 kb on + strandat 4872.088 kb on - strand, within PS417_22505at 4872.088 kb on - strand, within PS417_22505at 4872.220 kb on + strandat 4872.220 kb on + strandat 4872.220 kb on + strandat 4872.221 kb on - strandat 4872.221 kb on - strandat 4872.221 kb on - strandat 4872.221 kb on - strandat 4872.221 kb on - strandat 4872.251 kb on - strandat 4872.263 kb on + strandat 4872.263 kb on + strandat 4872.264 kb on - strandat 4872.264 kb on - strandat 4872.264 kb on - strandat 4872.293 kb on - strandat 4872.854 kb on - strandat 4872.854 kb on - strandat 4872.854 kb on - strandat 4872.855 kb on + strandat 4872.855 kb on + strandat 4872.856 kb on - strandat 4872.856 kb on - strandat 4872.856 kb on - strandat 4872.909 kb on + strandat 4872.911 kb on + strandat 4872.911 kb on + strandat 4872.912 kb on - strandat 4872.912 kb on - strandat 4872.980 kb on + strandat 4872.981 kb on - strandat 4872.981 kb on - strandat 4873.124 kb on - strand, within PS417_22515at 4873.203 kb on + strandat 4873.204 kb on - strand, within PS417_22515at 4873.399 kb on - strand, within PS417_22515at 4873.555 kb on - strand, within PS417_22515at 4873.555 kb on - strand, within PS417_22515at 4873.711 kb on - strand, within PS417_22515at 4873.723 kb on - strand, within PS417_22515at 4873.723 kb on - strand, within PS417_22515at 4873.762 kb on - strand, within PS417_22515at 4873.762 kb on - strand, within PS417_22515at 4873.765 kb on + strand, within PS417_22515at 4873.765 kb on + strand, within PS417_22515at 4873.765 kb on + strand, within PS417_22515at 4873.766 kb on - strand, within PS417_22515at 4873.766 kb on - strandat 4873.766 kb on - strand, within PS417_22515at 4874.360 kb on + strand, within PS417_22520at 4874.545 kb on + strand, within PS417_22520

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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4,872,020 + PS417_22505 0.76 +3.4
4,872,050 + PS417_22505 0.80 +1.9
4,872,087 + PS417_22505 0.84 -1.3
4,872,087 + +2.6
4,872,088 - PS417_22505 0.84 -0.4
4,872,088 - PS417_22505 0.84 -0.3
4,872,220 + +1.0
4,872,220 + -0.2
4,872,220 + +0.6
4,872,221 - -0.3
4,872,221 - -0.1
4,872,221 - -0.2
4,872,221 - +0.9
4,872,221 - -1.0
4,872,251 - -0.9
4,872,263 + +0.6
4,872,263 + +0.4
4,872,264 - -1.4
4,872,264 - +0.6
4,872,264 - -1.7
4,872,293 - +0.3
4,872,854 - +0.7
4,872,854 - -0.6
4,872,854 - +0.1
4,872,855 + +0.1
4,872,855 + +0.6
4,872,856 - -0.2
4,872,856 - -0.3
4,872,856 - +0.3
4,872,909 + -0.8
4,872,911 + -0.1
4,872,911 + -0.6
4,872,912 - -0.5
4,872,912 - -0.4
4,872,980 + -0.7
4,872,981 - -0.1
4,872,981 - -0.3
4,873,124 - PS417_22515 0.18 -0.4
4,873,203 + -0.3
4,873,204 - PS417_22515 0.26 -0.1
4,873,399 - PS417_22515 0.47 -0.4
4,873,555 - PS417_22515 0.64 -0.7
4,873,555 - PS417_22515 0.64 -0.7
4,873,711 - PS417_22515 0.81 +2.0
4,873,723 - PS417_22515 0.83 -0.0
4,873,723 - PS417_22515 0.83 -0.2
4,873,762 - PS417_22515 0.87 -0.4
4,873,762 - PS417_22515 0.87 +0.7
4,873,765 + PS417_22515 0.87 -0.6
4,873,765 + PS417_22515 0.87 -0.3
4,873,765 + PS417_22515 0.87 -1.5
4,873,766 - PS417_22515 0.87 -0.1
4,873,766 - +2.2
4,873,766 - PS417_22515 0.87 -1.1
4,874,360 + PS417_22520 0.21 +1.3
4,874,545 + PS417_22520 0.30 +0.9

Or see this region's nucleotide sequence