Strain Fitness in Pseudomonas simiae WCS417 around PS417_16695

Experiment: 80% Methanol 3 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_16685 and PS417_16690 are separated by 86 nucleotidesPS417_16690 and PS417_16695 overlap by 8 nucleotidesPS417_16695 and PS417_16700 overlap by 4 nucleotidesPS417_16700 and PS417_16705 are separated by 59 nucleotides PS417_16685: PS417_16685 - multidrug MFS transporter, at 3,642,855 to 3,644,219 _16685 PS417_16690: PS417_16690 - hypothetical protein, at 3,644,306 to 3,644,758 _16690 PS417_16695: PS417_16695 - hypothetical protein, at 3,644,751 to 3,645,500 _16695 PS417_16700: PS417_16700 - hypothetical protein, at 3,645,497 to 3,646,321 _16700 PS417_16705: PS417_16705 - hypothetical protein, at 3,646,381 to 3,646,653 _16705 Position (kb) 3644 3645 3646Strain fitness (log2 ratio) -2 -1 0 1at 3643.763 kb on + strand, within PS417_16685at 3643.763 kb on + strand, within PS417_16685at 3643.764 kb on - strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.792 kb on + strand, within PS417_16685at 3643.793 kb on - strand, within PS417_16685at 3643.829 kb on + strand, within PS417_16685at 3643.830 kb on - strand, within PS417_16685at 3644.044 kb on + strand, within PS417_16685at 3644.045 kb on - strand, within PS417_16685at 3644.301 kb on + strandat 3644.477 kb on - strand, within PS417_16690at 3644.804 kb on - strandat 3645.235 kb on + strand, within PS417_16695at 3645.236 kb on - strand, within PS417_16695at 3645.236 kb on - strand, within PS417_16695at 3645.344 kb on - strand, within PS417_16695at 3645.385 kb on + strand, within PS417_16695at 3645.385 kb on + strand, within PS417_16695at 3645.483 kb on + strandat 3645.787 kb on + strand, within PS417_16700at 3645.839 kb on - strand, within PS417_16700at 3645.880 kb on - strand, within PS417_16700at 3645.880 kb on - strand, within PS417_16700at 3645.973 kb on - strand, within PS417_16700at 3646.174 kb on + strand, within PS417_16700at 3646.175 kb on - strand, within PS417_16700at 3646.387 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
remove
3,643,763 + PS417_16685 0.67 +0.1
3,643,763 + PS417_16685 0.67 -0.2
3,643,764 - PS417_16685 0.67 +0.0
3,643,790 + PS417_16685 0.68 +0.4
3,643,790 + PS417_16685 0.68 +0.2
3,643,790 + PS417_16685 0.68 +1.0
3,643,791 - PS417_16685 0.69 -0.5
3,643,791 - PS417_16685 0.69 -0.2
3,643,792 + PS417_16685 0.69 -0.1
3,643,793 - PS417_16685 0.69 +1.1
3,643,829 + PS417_16685 0.71 -0.6
3,643,830 - PS417_16685 0.71 -0.4
3,644,044 + PS417_16685 0.87 -0.3
3,644,045 - PS417_16685 0.87 -0.2
3,644,301 + +1.4
3,644,477 - PS417_16690 0.38 -2.2
3,644,804 - +0.0
3,645,235 + PS417_16695 0.65 -0.5
3,645,236 - PS417_16695 0.65 -0.1
3,645,236 - PS417_16695 0.65 -0.9
3,645,344 - PS417_16695 0.79 -0.8
3,645,385 + PS417_16695 0.85 -0.8
3,645,385 + PS417_16695 0.85 -0.1
3,645,483 + -0.1
3,645,787 + PS417_16700 0.35 -0.3
3,645,839 - PS417_16700 0.41 -0.2
3,645,880 - PS417_16700 0.46 +0.1
3,645,880 - PS417_16700 0.46 -0.2
3,645,973 - PS417_16700 0.58 +0.0
3,646,174 + PS417_16700 0.82 +1.4
3,646,175 - PS417_16700 0.82 -0.0
3,646,387 - -0.2

Or see this region's nucleotide sequence