Strain Fitness in Pseudomonas simiae WCS417 around PS417_14805

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14800 and PS417_14805 overlap by 8 nucleotidesPS417_14805 and PS417_14810 are separated by 98 nucleotides PS417_14800: PS417_14800 - diguanylate cyclase, at 3,233,767 to 3,236,349 _14800 PS417_14805: PS417_14805 - AraC family transcriptional regulator, at 3,236,342 to 3,237,163 _14805 PS417_14810: PS417_14810 - Fosmidomycin resistance protein, at 3,237,262 to 3,238,473 _14810 Position (kb) 3236 3237 3238Strain fitness (log2 ratio) -1 0 1at 3235.379 kb on + strand, within PS417_14800at 3235.379 kb on + strand, within PS417_14800at 3235.527 kb on + strandat 3236.016 kb on - strand, within PS417_14800at 3236.062 kb on + strand, within PS417_14800at 3236.062 kb on + strand, within PS417_14800at 3236.564 kb on + strand, within PS417_14805at 3236.565 kb on - strand, within PS417_14805at 3237.176 kb on + strandat 3237.249 kb on - strandat 3237.419 kb on - strand, within PS417_14810at 3237.973 kb on + strandat 3238.012 kb on + strand, within PS417_14810at 3238.013 kb on - strand, within PS417_14810

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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3,235,379 + PS417_14800 0.62 +0.0
3,235,379 + PS417_14800 0.62 -0.1
3,235,527 + -1.0
3,236,016 - PS417_14800 0.87 -0.3
3,236,062 + PS417_14800 0.89 +0.1
3,236,062 + PS417_14800 0.89 -0.3
3,236,564 + PS417_14805 0.27 -1.0
3,236,565 - PS417_14805 0.27 -0.8
3,237,176 + -0.2
3,237,249 - -0.1
3,237,419 - PS417_14810 0.13 -1.4
3,237,973 + -0.5
3,238,012 + PS417_14810 0.62 +0.1
3,238,013 - PS417_14810 0.62 -0.2

Or see this region's nucleotide sequence