Strain Fitness in Pseudomonas simiae WCS417 around PS417_09030

Experiment: 80% Methanol 3 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09020 and PS417_09025 are separated by 97 nucleotidesPS417_09025 and PS417_09030 overlap by 4 nucleotidesPS417_09030 and PS417_09035 are separated by 102 nucleotidesPS417_09035 and PS417_09040 are separated by 72 nucleotides PS417_09020: PS417_09020 - esterase, at 1,964,678 to 1,965,121 _09020 PS417_09025: PS417_09025 - alpha/beta hydrolase, at 1,965,219 to 1,966,022 _09025 PS417_09030: PS417_09030 - alpha/beta hydrolase, at 1,966,019 to 1,966,873 _09030 PS417_09035: PS417_09035 - hypothetical protein, at 1,966,976 to 1,967,794 _09035 PS417_09040: PS417_09040 - hypothetical protein, at 1,967,867 to 1,968,928 _09040 Position (kb) 1966 1967Strain fitness (log2 ratio) -1 0 1at 1965.153 kb on + strandat 1965.153 kb on + strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.271 kb on - strandat 1965.305 kb on + strand, within PS417_09025at 1965.305 kb on + strand, within PS417_09025at 1965.306 kb on - strand, within PS417_09025at 1965.360 kb on - strand, within PS417_09025at 1965.486 kb on + strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025at 1965.700 kb on - strand, within PS417_09025at 1965.700 kb on - strand, within PS417_09025at 1965.717 kb on + strand, within PS417_09025at 1965.718 kb on - strand, within PS417_09025at 1965.775 kb on - strand, within PS417_09025at 1966.229 kb on - strand, within PS417_09030at 1966.229 kb on - strand, within PS417_09030at 1966.256 kb on + strand, within PS417_09030at 1966.262 kb on + strand, within PS417_09030at 1966.312 kb on - strand, within PS417_09030at 1966.496 kb on + strand, within PS417_09030at 1966.497 kb on - strand, within PS417_09030at 1966.497 kb on - strand, within PS417_09030at 1966.498 kb on + strand, within PS417_09030at 1966.692 kb on + strand, within PS417_09030at 1966.975 kb on + strandat 1966.975 kb on + strandat 1966.976 kb on - strandat 1966.997 kb on - strandat 1967.134 kb on + strand, within PS417_09035at 1967.135 kb on - strand, within PS417_09035at 1967.138 kb on + strand, within PS417_09035at 1967.226 kb on - strand, within PS417_09035at 1967.496 kb on + strand, within PS417_09035at 1967.798 kb on + strandat 1967.830 kb on - strandat 1967.842 kb on + strandat 1967.842 kb on + strandat 1967.864 kb on + strandat 1967.864 kb on + strandat 1967.865 kb on - strandat 1967.865 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
remove
1,965,153 + -0.6
1,965,153 + -1.0
1,965,154 - -0.6
1,965,154 - +0.0
1,965,154 - +0.4
1,965,154 - -0.4
1,965,271 - +0.7
1,965,305 + PS417_09025 0.11 +0.3
1,965,305 + PS417_09025 0.11 -0.2
1,965,306 - PS417_09025 0.11 +0.6
1,965,360 - PS417_09025 0.18 -0.5
1,965,486 + PS417_09025 0.33 +0.1
1,965,646 - PS417_09025 0.53 -0.2
1,965,646 - PS417_09025 0.53 -0.0
1,965,700 - PS417_09025 0.60 +0.8
1,965,700 - PS417_09025 0.60 -0.2
1,965,717 + PS417_09025 0.62 +1.1
1,965,718 - PS417_09025 0.62 -0.2
1,965,775 - PS417_09025 0.69 -0.2
1,966,229 - PS417_09030 0.25 +0.3
1,966,229 - PS417_09030 0.25 +0.3
1,966,256 + PS417_09030 0.28 +0.1
1,966,262 + PS417_09030 0.28 +0.5
1,966,312 - PS417_09030 0.34 +1.1
1,966,496 + PS417_09030 0.56 +0.1
1,966,497 - PS417_09030 0.56 -0.2
1,966,497 - PS417_09030 0.56 -0.0
1,966,498 + PS417_09030 0.56 -0.1
1,966,692 + PS417_09030 0.79 +0.5
1,966,975 + +0.2
1,966,975 + +1.1
1,966,976 - +1.2
1,966,997 - -1.5
1,967,134 + PS417_09035 0.19 -0.7
1,967,135 - PS417_09035 0.19 +0.1
1,967,138 + PS417_09035 0.20 +0.3
1,967,226 - PS417_09035 0.31 +0.3
1,967,496 + PS417_09035 0.63 +0.0
1,967,798 + -0.1
1,967,830 - +0.0
1,967,842 + +0.1
1,967,842 + +0.3
1,967,864 + +1.0
1,967,864 + -0.3
1,967,865 - +0.3
1,967,865 - +0.9

Or see this region's nucleotide sequence