Experiment: 80% Methanol 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07120 and PS417_07125 are separated by 32 nucleotides PS417_07125 and PS417_07130 are separated by 15 nucleotides PS417_07130 and PS417_07135 are separated by 234 nucleotides
PS417_07120: PS417_07120 - RNA polymerase sigma-H factor, at 1,575,007 to 1,575,588
_07120
PS417_07125: PS417_07125 - RNA polymerase sigma-H factor AlgU, at 1,575,621 to 1,576,208
_07125
PS417_07130: PS417_07130 - RNA polymerase sigma-H factor AlgU, at 1,576,224 to 1,577,186
_07130
PS417_07135: PS417_07135 - serine peptidase, at 1,577,421 to 1,578,860
_07135
Position (kb)
1576
1577
1578 Strain fitness (log2 ratio)
-2
-1
0
1 at 1575.230 kb on + strand, within PS417_07120 at 1575.263 kb on - strand, within PS417_07120 at 1575.263 kb on - strand, within PS417_07120 at 1575.302 kb on + strand, within PS417_07120 at 1575.303 kb on - strand, within PS417_07120 at 1575.303 kb on - strand, within PS417_07120 at 1575.475 kb on + strand, within PS417_07120 at 1575.475 kb on + strand, within PS417_07120 at 1576.224 kb on - strand at 1576.349 kb on + strand, within PS417_07130 at 1576.350 kb on - strand, within PS417_07130 at 1576.360 kb on - strand, within PS417_07130 at 1576.575 kb on + strand, within PS417_07130 at 1576.859 kb on + strand, within PS417_07130 at 1576.962 kb on + strand, within PS417_07130 at 1576.962 kb on + strand, within PS417_07130 at 1576.962 kb on + strand, within PS417_07130 at 1576.963 kb on - strand, within PS417_07130 at 1576.963 kb on - strand, within PS417_07130 at 1576.963 kb on - strand, within PS417_07130 at 1577.060 kb on - strand, within PS417_07130 at 1577.075 kb on + strand, within PS417_07130 at 1577.198 kb on + strand at 1577.198 kb on + strand at 1577.199 kb on - strand at 1577.199 kb on - strand at 1577.199 kb on - strand at 1577.222 kb on + strand at 1577.223 kb on - strand at 1577.223 kb on - strand at 1577.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress remove 1,575,230 + PS417_07120 0.38 -1.4 1,575,263 - PS417_07120 0.44 -0.1 1,575,263 - PS417_07120 0.44 +0.5 1,575,302 + PS417_07120 0.51 -0.2 1,575,303 - PS417_07120 0.51 -0.3 1,575,303 - PS417_07120 0.51 +0.6 1,575,475 + PS417_07120 0.80 -1.9 1,575,475 + PS417_07120 0.80 -0.8 1,576,224 - +0.0 1,576,349 + PS417_07130 0.13 +0.6 1,576,350 - PS417_07130 0.13 +1.3 1,576,360 - PS417_07130 0.14 -0.5 1,576,575 + PS417_07130 0.36 +0.1 1,576,859 + PS417_07130 0.66 -0.2 1,576,962 + PS417_07130 0.77 -0.2 1,576,962 + PS417_07130 0.77 +0.3 1,576,962 + PS417_07130 0.77 +0.1 1,576,963 - PS417_07130 0.77 +0.1 1,576,963 - PS417_07130 0.77 +1.2 1,576,963 - PS417_07130 0.77 +0.5 1,577,060 - PS417_07130 0.87 +0.0 1,577,075 + PS417_07130 0.88 +0.8 1,577,198 + -0.3 1,577,198 + -2.0 1,577,199 - -0.4 1,577,199 - +0.1 1,577,199 - +1.4 1,577,222 + -0.4 1,577,223 - +0.4 1,577,223 - +0.9 1,577,223 - -0.2
Or see this region's nucleotide sequence