Strain Fitness in Pseudomonas simiae WCS417 around PS417_06565

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06555 and PS417_06560 are separated by 106 nucleotidesPS417_06560 and PS417_06565 are separated by 96 nucleotidesPS417_06565 and PS417_06570 are separated by 105 nucleotides PS417_06555: PS417_06555 - hypothetical protein, at 1,453,031 to 1,454,644 _06555 PS417_06560: PS417_06560 - membrane protein, at 1,454,751 to 1,455,422 _06560 PS417_06565: PS417_06565 - short-chain dehydrogenase, at 1,455,519 to 1,456,118 _06565 PS417_06570: PS417_06570 - LysR family transcriptional regulator, at 1,456,224 to 1,457,132 _06570 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -1 0 1 2at 1454.521 kb on + strandat 1454.521 kb on + strandat 1454.522 kb on - strandat 1454.522 kb on - strandat 1454.639 kb on + strandat 1454.700 kb on + strandat 1454.700 kb on + strandat 1454.700 kb on + strandat 1454.701 kb on - strandat 1454.702 kb on + strandat 1454.703 kb on - strandat 1454.703 kb on - strandat 1454.732 kb on - strandat 1454.947 kb on + strand, within PS417_06560at 1454.948 kb on - strand, within PS417_06560at 1455.101 kb on - strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.248 kb on - strand, within PS417_06560at 1455.248 kb on - strand, within PS417_06560at 1455.396 kb on + strandat 1455.396 kb on + strandat 1455.530 kb on + strandat 1455.607 kb on + strand, within PS417_06565at 1455.619 kb on + strand, within PS417_06565at 1455.628 kb on + strand, within PS417_06565at 1455.628 kb on + strand, within PS417_06565at 1455.629 kb on - strand, within PS417_06565at 1456.002 kb on - strand, within PS417_06565at 1456.003 kb on + strand, within PS417_06565at 1456.140 kb on + strandat 1456.141 kb on - strandat 1456.157 kb on + strandat 1456.157 kb on + strandat 1456.157 kb on + strandat 1456.178 kb on + strandat 1456.190 kb on + strandat 1456.274 kb on + strandat 1456.280 kb on + strandat 1456.281 kb on - strandat 1456.391 kb on + strand, within PS417_06570at 1456.391 kb on + strand, within PS417_06570at 1456.575 kb on + strand, within PS417_06570at 1456.585 kb on + strand, within PS417_06570at 1456.586 kb on - strand, within PS417_06570at 1456.586 kb on - strand, within PS417_06570at 1456.806 kb on + strand, within PS417_06570at 1456.831 kb on - strand, within PS417_06570at 1456.928 kb on + strand, within PS417_06570at 1456.947 kb on + strand, within PS417_06570at 1456.947 kb on + strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1457.025 kb on + strand, within PS417_06570

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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1,454,521 + -1.2
1,454,521 + +0.8
1,454,522 - -0.3
1,454,522 - -0.4
1,454,639 + +0.1
1,454,700 + +0.3
1,454,700 + +0.6
1,454,700 + -0.0
1,454,701 - -0.2
1,454,702 + +1.8
1,454,703 - +1.4
1,454,703 - +0.4
1,454,732 - -0.2
1,454,947 + PS417_06560 0.29 +0.4
1,454,948 - PS417_06560 0.29 -0.2
1,455,101 - PS417_06560 0.52 +0.3
1,455,247 + PS417_06560 0.74 -0.7
1,455,247 + PS417_06560 0.74 -0.5
1,455,247 + PS417_06560 0.74 -1.7
1,455,248 - PS417_06560 0.74 -0.2
1,455,248 - PS417_06560 0.74 +0.4
1,455,396 + +1.1
1,455,396 + -0.0
1,455,530 + -0.1
1,455,607 + PS417_06565 0.15 -0.3
1,455,619 + PS417_06565 0.17 -0.1
1,455,628 + PS417_06565 0.18 -0.2
1,455,628 + PS417_06565 0.18 -0.2
1,455,629 - PS417_06565 0.18 +2.5
1,456,002 - PS417_06565 0.81 +0.0
1,456,003 + PS417_06565 0.81 +0.6
1,456,140 + -0.3
1,456,141 - -0.0
1,456,157 + -1.0
1,456,157 + +0.4
1,456,157 + -0.2
1,456,178 + +0.2
1,456,190 + -0.9
1,456,274 + -0.5
1,456,280 + -0.1
1,456,281 - +0.6
1,456,391 + PS417_06570 0.18 -0.2
1,456,391 + PS417_06570 0.18 -0.2
1,456,575 + PS417_06570 0.39 -0.3
1,456,585 + PS417_06570 0.40 -0.5
1,456,586 - PS417_06570 0.40 +0.4
1,456,586 - PS417_06570 0.40 +0.4
1,456,806 + PS417_06570 0.64 +0.1
1,456,831 - PS417_06570 0.67 +0.9
1,456,928 + PS417_06570 0.77 -0.7
1,456,947 + PS417_06570 0.80 +1.9
1,456,947 + PS417_06570 0.80 -0.3
1,456,948 - PS417_06570 0.80 -0.4
1,456,948 - PS417_06570 0.80 +0.9
1,456,948 - PS417_06570 0.80 +0.9
1,457,025 + PS417_06570 0.88 +0.0

Or see this region's nucleotide sequence