Strain Fitness in Pseudomonas simiae WCS417 around PS417_13260

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13255 and PS417_13260 overlap by 4 nucleotidesPS417_13260 and PS417_13265 are separated by 38 nucleotides PS417_13255: PS417_13255 - ABC transporter, at 2,899,581 to 2,901,314 _13255 PS417_13260: PS417_13260 - pyochelin synthetase, at 2,901,311 to 2,906,767 _13260 PS417_13265: PS417_13265 - peptide synthetase, at 2,906,806 to 2,913,225 _13265 Position (kb) 2901 2902 2903 2904 2905 2906 2907Strain fitness (log2 ratio) -2 -1 0 1at 2900.801 kb on - strand, within PS417_13255at 2900.801 kb on - strand, within PS417_13255at 2901.508 kb on - strandat 2901.639 kb on + strandat 2901.871 kb on - strand, within PS417_13260at 2902.095 kb on + strand, within PS417_13260at 2902.658 kb on + strand, within PS417_13260at 2902.683 kb on + strand, within PS417_13260at 2902.683 kb on + strand, within PS417_13260at 2902.871 kb on + strand, within PS417_13260at 2902.871 kb on + strand, within PS417_13260at 2902.994 kb on + strand, within PS417_13260at 2903.479 kb on - strand, within PS417_13260at 2903.590 kb on - strand, within PS417_13260at 2903.778 kb on + strand, within PS417_13260at 2904.171 kb on + strand, within PS417_13260at 2904.172 kb on - strandat 2904.172 kb on - strand, within PS417_13260at 2904.172 kb on - strand, within PS417_13260at 2904.172 kb on - strand, within PS417_13260at 2904.172 kb on - strand, within PS417_13260at 2904.612 kb on + strand, within PS417_13260at 2904.613 kb on - strand, within PS417_13260at 2904.771 kb on + strand, within PS417_13260at 2904.972 kb on + strand, within PS417_13260at 2904.999 kb on + strand, within PS417_13260at 2905.827 kb on - strand, within PS417_13260at 2905.846 kb on + strand, within PS417_13260at 2906.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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2,900,801 - PS417_13255 0.70 -0.9
2,900,801 - PS417_13255 0.70 -0.8
2,901,508 - -0.5
2,901,639 + -0.4
2,901,871 - PS417_13260 0.10 -0.1
2,902,095 + PS417_13260 0.14 -0.4
2,902,658 + PS417_13260 0.25 -0.7
2,902,683 + PS417_13260 0.25 -0.6
2,902,683 + PS417_13260 0.25 -0.4
2,902,871 + PS417_13260 0.29 -2.7
2,902,871 + PS417_13260 0.29 -0.3
2,902,994 + PS417_13260 0.31 -1.2
2,903,479 - PS417_13260 0.40 -0.2
2,903,590 - PS417_13260 0.42 -1.1
2,903,778 + PS417_13260 0.45 -0.8
2,904,171 + PS417_13260 0.52 -0.0
2,904,172 - +0.4
2,904,172 - PS417_13260 0.52 -0.8
2,904,172 - PS417_13260 0.52 -0.7
2,904,172 - PS417_13260 0.52 +1.2
2,904,172 - PS417_13260 0.52 -0.4
2,904,612 + PS417_13260 0.60 -1.0
2,904,613 - PS417_13260 0.61 -0.1
2,904,771 + PS417_13260 0.63 -1.2
2,904,972 + PS417_13260 0.67 -0.8
2,904,999 + PS417_13260 0.68 -1.4
2,905,827 - PS417_13260 0.83 -0.7
2,905,846 + PS417_13260 0.83 -0.8
2,906,285 - +0.2

Or see this region's nucleotide sequence