Strain Fitness in Pseudomonas simiae WCS417 around PS417_07535

Experiment: 80% Methanol 2 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_07530 and PS417_07535 are separated by 140 nucleotidesPS417_07535 and PS417_07540 are separated by 53 nucleotidesPS417_07540 and PS417_07545 are separated by 267 nucleotides PS417_07530: PS417_07530 - multidrug transporter, at 1,655,733 to 1,657,127 _07530 PS417_07535: PS417_07535 - erythronate-4-phosphate dehydrogenase, at 1,657,268 to 1,658,410 _07535 PS417_07540: PS417_07540 - multifunctional fatty acid oxidation complex subunit alpha, at 1,658,464 to 1,658,637 _07540 PS417_07545: PS417_07545 - ABC transporter ATP-binding protein, at 1,658,905 to 1,660,680 _07545 Position (kb) 1657 1658 1659Strain fitness (log2 ratio) -2 -1 0 1 2at 1656.387 kb on + strand, within PS417_07530at 1656.387 kb on + strand, within PS417_07530at 1656.387 kb on + strand, within PS417_07530at 1656.430 kb on + strand, within PS417_07530at 1656.430 kb on + strand, within PS417_07530at 1656.430 kb on + strandat 1656.430 kb on + strand, within PS417_07530at 1656.448 kb on + strand, within PS417_07530at 1656.562 kb on + strand, within PS417_07530at 1656.574 kb on + strandat 1656.667 kb on + strand, within PS417_07530at 1656.667 kb on + strand, within PS417_07530at 1656.668 kb on - strand, within PS417_07530at 1656.670 kb on + strand, within PS417_07530at 1656.671 kb on - strand, within PS417_07530at 1656.713 kb on - strandat 1656.926 kb on - strand, within PS417_07530at 1657.129 kb on + strandat 1657.130 kb on - strandat 1657.130 kb on - strandat 1657.130 kb on - strandat 1657.142 kb on + strandat 1657.143 kb on - strandat 1657.170 kb on + strandat 1658.566 kb on - strand, within PS417_07540at 1658.567 kb on + strand, within PS417_07540at 1658.567 kb on + strand, within PS417_07540at 1658.568 kb on - strand, within PS417_07540at 1658.663 kb on - strandat 1658.663 kb on - strandat 1658.666 kb on + strandat 1658.666 kb on + strandat 1658.666 kb on + strandat 1658.667 kb on - strandat 1658.667 kb on - strandat 1658.667 kb on - strandat 1658.675 kb on + strandat 1658.678 kb on + strandat 1658.678 kb on + strandat 1658.678 kb on + strandat 1658.708 kb on + strandat 1658.709 kb on - strandat 1658.709 kb on - strandat 1658.797 kb on - strandat 1658.819 kb on - strandat 1658.819 kb on - strandat 1658.839 kb on - strandat 1658.839 kb on - strandat 1658.870 kb on - strandat 1658.870 kb on - strandat 1658.877 kb on + strandat 1658.877 kb on + strandat 1658.877 kb on + strandat 1658.877 kb on + strandat 1658.877 kb on + strandat 1658.878 kb on - strandat 1658.878 kb on - strandat 1658.963 kb on - strandat 1659.016 kb on - strandat 1659.016 kb on - strandat 1659.155 kb on - strand, within PS417_07545at 1659.155 kb on - strand, within PS417_07545at 1659.241 kb on + strandat 1659.308 kb on + strandat 1659.339 kb on + strand, within PS417_07545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
remove
1,656,387 + PS417_07530 0.47 +0.2
1,656,387 + PS417_07530 0.47 -0.0
1,656,387 + PS417_07530 0.47 +0.2
1,656,430 + PS417_07530 0.50 +1.8
1,656,430 + PS417_07530 0.50 +0.3
1,656,430 + +0.7
1,656,430 + PS417_07530 0.50 +0.5
1,656,448 + PS417_07530 0.51 -0.7
1,656,562 + PS417_07530 0.59 +0.0
1,656,574 + +0.4
1,656,667 + PS417_07530 0.67 +0.1
1,656,667 + PS417_07530 0.67 -0.3
1,656,668 - PS417_07530 0.67 -0.4
1,656,670 + PS417_07530 0.67 +0.4
1,656,671 - PS417_07530 0.67 +1.3
1,656,713 - +1.3
1,656,926 - PS417_07530 0.86 +0.1
1,657,129 + +0.4
1,657,130 - -0.2
1,657,130 - +0.8
1,657,130 - -0.5
1,657,142 + -0.1
1,657,143 - -2.6
1,657,170 + +1.1
1,658,566 - PS417_07540 0.59 -1.0
1,658,567 + PS417_07540 0.59 -0.3
1,658,567 + PS417_07540 0.59 -0.6
1,658,568 - PS417_07540 0.60 -1.0
1,658,663 - +0.0
1,658,663 - -0.6
1,658,666 + -0.0
1,658,666 + +0.3
1,658,666 + +1.1
1,658,667 - -0.0
1,658,667 - +0.1
1,658,667 - -0.7
1,658,675 + +1.5
1,658,678 + -0.3
1,658,678 + +0.1
1,658,678 + +0.8
1,658,708 + -0.4
1,658,709 - -0.3
1,658,709 - +2.1
1,658,797 - -0.4
1,658,819 - +1.0
1,658,819 - +0.2
1,658,839 - +0.6
1,658,839 - -0.3
1,658,870 - -0.7
1,658,870 - -0.4
1,658,877 + +0.7
1,658,877 + -0.7
1,658,877 + +2.5
1,658,877 + +0.5
1,658,877 + +0.5
1,658,878 - +0.3
1,658,878 - -0.4
1,658,963 - -0.2
1,659,016 - +0.0
1,659,016 - -0.4
1,659,155 - PS417_07545 0.14 -0.4
1,659,155 - PS417_07545 0.14 -0.7
1,659,241 + -0.1
1,659,308 + -0.4
1,659,339 + PS417_07545 0.24 -0.8

Or see this region's nucleotide sequence