Strain Fitness in Pseudomonas simiae WCS417 around PS417_09635

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09625 and PS417_09630 are separated by 29 nucleotidesPS417_09630 and PS417_09635 are separated by 1 nucleotidesPS417_09635 and PS417_09640 overlap by 1 nucleotides PS417_09625: PS417_09625 - sugar ABC transporter substrate-binding protein, at 2,085,942 to 2,086,718 _09625 PS417_09630: PS417_09630 - glycosyl transferase, at 2,086,748 to 2,087,659 _09630 PS417_09635: PS417_09635 - mannose-1-phosphate guanylyltransferase, at 2,087,661 to 2,089,121 _09635 PS417_09640: PS417_09640 - capsular biosynthesis protein, at 2,089,121 to 2,090,560 _09640 Position (kb) 2087 2088 2089 2090Strain fitness (log2 ratio) -3 -2 -1 0 1at 2086.668 kb on - strandat 2086.854 kb on - strand, within PS417_09630at 2086.860 kb on - strand, within PS417_09630at 2086.920 kb on + strand, within PS417_09630at 2086.980 kb on + strand, within PS417_09630at 2087.028 kb on + strand, within PS417_09630at 2087.028 kb on + strand, within PS417_09630at 2087.029 kb on - strand, within PS417_09630at 2087.106 kb on + strand, within PS417_09630at 2087.106 kb on + strand, within PS417_09630at 2087.106 kb on + strand, within PS417_09630at 2087.106 kb on + strand, within PS417_09630at 2087.107 kb on - strand, within PS417_09630at 2087.663 kb on - strandat 2087.692 kb on + strandat 2087.731 kb on + strandat 2087.812 kb on + strand, within PS417_09635at 2087.812 kb on + strand, within PS417_09635at 2087.813 kb on - strand, within PS417_09635at 2087.813 kb on - strand, within PS417_09635at 2087.859 kb on - strand, within PS417_09635at 2087.989 kb on + strand, within PS417_09635at 2087.990 kb on - strand, within PS417_09635at 2088.029 kb on - strand, within PS417_09635at 2088.159 kb on + strand, within PS417_09635at 2088.159 kb on + strand, within PS417_09635at 2088.182 kb on - strand, within PS417_09635at 2088.182 kb on - strand, within PS417_09635at 2088.354 kb on - strand, within PS417_09635at 2088.634 kb on + strand, within PS417_09635at 2089.101 kb on + strandat 2089.125 kb on + strandat 2089.126 kb on - strandat 2089.126 kb on - strandat 2089.174 kb on - strandat 2089.174 kb on - strandat 2089.412 kb on + strand, within PS417_09640at 2089.413 kb on - strand, within PS417_09640at 2089.536 kb on + strand, within PS417_09640at 2089.536 kb on + strand, within PS417_09640at 2089.536 kb on + strand, within PS417_09640at 2089.537 kb on - strand, within PS417_09640at 2089.537 kb on - strand, within PS417_09640at 2090.101 kb on + strand, within PS417_09640at 2090.102 kb on - strand, within PS417_09640

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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2,086,668 - -0.7
2,086,854 - PS417_09630 0.12 -0.6
2,086,860 - PS417_09630 0.12 -0.7
2,086,920 + PS417_09630 0.19 -1.6
2,086,980 + PS417_09630 0.25 -1.0
2,087,028 + PS417_09630 0.31 -1.3
2,087,028 + PS417_09630 0.31 -0.6
2,087,029 - PS417_09630 0.31 -2.9
2,087,106 + PS417_09630 0.39 -1.7
2,087,106 + PS417_09630 0.39 -0.5
2,087,106 + PS417_09630 0.39 -1.5
2,087,106 + PS417_09630 0.39 -1.9
2,087,107 - PS417_09630 0.39 -0.1
2,087,663 - +0.2
2,087,692 + +0.2
2,087,731 + -0.7
2,087,812 + PS417_09635 0.10 -0.5
2,087,812 + PS417_09635 0.10 -0.6
2,087,813 - PS417_09635 0.10 -0.4
2,087,813 - PS417_09635 0.10 -0.1
2,087,859 - PS417_09635 0.14 -0.4
2,087,989 + PS417_09635 0.22 -0.3
2,087,990 - PS417_09635 0.23 -0.4
2,088,029 - PS417_09635 0.25 -1.0
2,088,159 + PS417_09635 0.34 -0.5
2,088,159 + PS417_09635 0.34 +0.8
2,088,182 - PS417_09635 0.36 -1.4
2,088,182 - PS417_09635 0.36 +0.1
2,088,354 - PS417_09635 0.47 +0.8
2,088,634 + PS417_09635 0.67 -0.7
2,089,101 + -0.8
2,089,125 + -1.8
2,089,126 - -0.4
2,089,126 - -0.9
2,089,174 - -1.1
2,089,174 - -0.3
2,089,412 + PS417_09640 0.20 +0.3
2,089,413 - PS417_09640 0.20 -1.3
2,089,536 + PS417_09640 0.29 -1.4
2,089,536 + PS417_09640 0.29 -0.8
2,089,536 + PS417_09640 0.29 -1.3
2,089,537 - PS417_09640 0.29 -0.9
2,089,537 - PS417_09640 0.29 -1.2
2,090,101 + PS417_09640 0.68 -0.7
2,090,102 - PS417_09640 0.68 -1.9

Or see this region's nucleotide sequence