Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06690 and PS417_06695 are separated by 145 nucleotides PS417_06695 and PS417_06700 are separated by 227 nucleotides
PS417_06690: PS417_06690 - IclR family transcriptional regulator, at 1,481,993 to 1,482,835
_06690
PS417_06695: PS417_06695 - 4-hydroxybenzoate transporter, at 1,482,981 to 1,484,321
_06695
PS417_06700: PS417_06700 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) , at 1,484,549 to 1,485,406
_06700
Position (kb)
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1482.074 kb on - strand at 1482.237 kb on - strand, within PS417_06690 at 1482.260 kb on + strand, within PS417_06690 at 1482.260 kb on + strand, within PS417_06690 at 1482.260 kb on + strand, within PS417_06690 at 1482.261 kb on - strand, within PS417_06690 at 1482.300 kb on - strand, within PS417_06690 at 1482.300 kb on - strand, within PS417_06690 at 1482.300 kb on - strand, within PS417_06690 at 1482.300 kb on - strand, within PS417_06690 at 1482.411 kb on - strand, within PS417_06690 at 1482.411 kb on - strand, within PS417_06690 at 1482.411 kb on - strand, within PS417_06690 at 1482.695 kb on + strand, within PS417_06690 at 1482.695 kb on + strand, within PS417_06690 at 1482.695 kb on + strand, within PS417_06690 at 1482.695 kb on + strand, within PS417_06690 at 1482.893 kb on + strand at 1482.894 kb on - strand at 1482.932 kb on - strand at 1482.932 kb on - strand at 1482.932 kb on - strand at 1483.312 kb on - strand, within PS417_06695 at 1483.312 kb on - strand, within PS417_06695 at 1483.446 kb on - strand, within PS417_06695 at 1483.446 kb on - strand, within PS417_06695 at 1483.446 kb on - strand, within PS417_06695 at 1483.446 kb on - strand, within PS417_06695 at 1483.488 kb on - strand, within PS417_06695 at 1483.755 kb on + strand, within PS417_06695 at 1483.789 kb on - strand, within PS417_06695 at 1483.812 kb on + strand, within PS417_06695 at 1484.035 kb on + strand, within PS417_06695 at 1484.036 kb on - strand, within PS417_06695 at 1484.378 kb on - strand at 1484.378 kb on - strand at 1484.698 kb on + strand, within PS417_06700 at 1484.880 kb on - strand, within PS417_06700 at 1485.255 kb on - strand, within PS417_06700 at 1485.255 kb on - strand, within PS417_06700 at 1485.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 1,482,074 - -0.1 1,482,237 - PS417_06690 0.29 -0.2 1,482,260 + PS417_06690 0.32 +0.1 1,482,260 + PS417_06690 0.32 -0.3 1,482,260 + PS417_06690 0.32 +1.0 1,482,261 - PS417_06690 0.32 -0.2 1,482,300 - PS417_06690 0.36 -0.5 1,482,300 - PS417_06690 0.36 -0.2 1,482,300 - PS417_06690 0.36 -0.2 1,482,300 - PS417_06690 0.36 +0.8 1,482,411 - PS417_06690 0.50 -0.3 1,482,411 - PS417_06690 0.50 -0.3 1,482,411 - PS417_06690 0.50 +0.2 1,482,695 + PS417_06690 0.83 -0.3 1,482,695 + PS417_06690 0.83 -0.4 1,482,695 + PS417_06690 0.83 -0.3 1,482,695 + PS417_06690 0.83 +0.3 1,482,893 + +0.5 1,482,894 - +0.1 1,482,932 - -2.2 1,482,932 - +1.3 1,482,932 - +0.3 1,483,312 - PS417_06695 0.25 -1.2 1,483,312 - PS417_06695 0.25 -1.0 1,483,446 - PS417_06695 0.35 -0.3 1,483,446 - PS417_06695 0.35 -0.7 1,483,446 - PS417_06695 0.35 -1.2 1,483,446 - PS417_06695 0.35 -0.3 1,483,488 - PS417_06695 0.38 -0.9 1,483,755 + PS417_06695 0.58 -0.3 1,483,789 - PS417_06695 0.60 +0.3 1,483,812 + PS417_06695 0.62 -0.6 1,484,035 + PS417_06695 0.79 -0.4 1,484,036 - PS417_06695 0.79 -0.5 1,484,378 - -0.5 1,484,378 - -0.5 1,484,698 + PS417_06700 0.17 +0.1 1,484,880 - PS417_06700 0.39 +0.3 1,485,255 - PS417_06700 0.82 -1.5 1,485,255 - PS417_06700 0.82 +0.5 1,485,278 + +1.8
Or see this region's nucleotide sequence