Strain Fitness in Pseudomonas simiae WCS417 around PS417_06695

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06690 and PS417_06695 are separated by 145 nucleotidesPS417_06695 and PS417_06700 are separated by 227 nucleotides PS417_06690: PS417_06690 - IclR family transcriptional regulator, at 1,481,993 to 1,482,835 _06690 PS417_06695: PS417_06695 - 4-hydroxybenzoate transporter, at 1,482,981 to 1,484,321 _06695 PS417_06700: PS417_06700 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data), at 1,484,549 to 1,485,406 _06700 Position (kb) 1482 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1 2at 1482.074 kb on - strandat 1482.237 kb on - strand, within PS417_06690at 1482.260 kb on + strand, within PS417_06690at 1482.260 kb on + strand, within PS417_06690at 1482.260 kb on + strand, within PS417_06690at 1482.261 kb on - strand, within PS417_06690at 1482.300 kb on - strand, within PS417_06690at 1482.300 kb on - strand, within PS417_06690at 1482.300 kb on - strand, within PS417_06690at 1482.300 kb on - strand, within PS417_06690at 1482.411 kb on - strand, within PS417_06690at 1482.411 kb on - strand, within PS417_06690at 1482.411 kb on - strand, within PS417_06690at 1482.695 kb on + strand, within PS417_06690at 1482.695 kb on + strand, within PS417_06690at 1482.695 kb on + strand, within PS417_06690at 1482.695 kb on + strand, within PS417_06690at 1482.893 kb on + strandat 1482.894 kb on - strandat 1482.932 kb on - strandat 1482.932 kb on - strandat 1482.932 kb on - strandat 1483.312 kb on - strand, within PS417_06695at 1483.312 kb on - strand, within PS417_06695at 1483.446 kb on - strand, within PS417_06695at 1483.446 kb on - strand, within PS417_06695at 1483.446 kb on - strand, within PS417_06695at 1483.446 kb on - strand, within PS417_06695at 1483.488 kb on - strand, within PS417_06695at 1483.755 kb on + strand, within PS417_06695at 1483.789 kb on - strand, within PS417_06695at 1483.812 kb on + strand, within PS417_06695at 1484.035 kb on + strand, within PS417_06695at 1484.036 kb on - strand, within PS417_06695at 1484.378 kb on - strandat 1484.378 kb on - strandat 1484.698 kb on + strand, within PS417_06700at 1484.880 kb on - strand, within PS417_06700at 1485.255 kb on - strand, within PS417_06700at 1485.255 kb on - strand, within PS417_06700at 1485.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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1,482,074 - -0.1
1,482,237 - PS417_06690 0.29 -0.2
1,482,260 + PS417_06690 0.32 +0.1
1,482,260 + PS417_06690 0.32 -0.3
1,482,260 + PS417_06690 0.32 +1.0
1,482,261 - PS417_06690 0.32 -0.2
1,482,300 - PS417_06690 0.36 -0.5
1,482,300 - PS417_06690 0.36 -0.2
1,482,300 - PS417_06690 0.36 -0.2
1,482,300 - PS417_06690 0.36 +0.8
1,482,411 - PS417_06690 0.50 -0.3
1,482,411 - PS417_06690 0.50 -0.3
1,482,411 - PS417_06690 0.50 +0.2
1,482,695 + PS417_06690 0.83 -0.3
1,482,695 + PS417_06690 0.83 -0.4
1,482,695 + PS417_06690 0.83 -0.3
1,482,695 + PS417_06690 0.83 +0.3
1,482,893 + +0.5
1,482,894 - +0.1
1,482,932 - -2.2
1,482,932 - +1.3
1,482,932 - +0.3
1,483,312 - PS417_06695 0.25 -1.2
1,483,312 - PS417_06695 0.25 -1.0
1,483,446 - PS417_06695 0.35 -0.3
1,483,446 - PS417_06695 0.35 -0.7
1,483,446 - PS417_06695 0.35 -1.2
1,483,446 - PS417_06695 0.35 -0.3
1,483,488 - PS417_06695 0.38 -0.9
1,483,755 + PS417_06695 0.58 -0.3
1,483,789 - PS417_06695 0.60 +0.3
1,483,812 + PS417_06695 0.62 -0.6
1,484,035 + PS417_06695 0.79 -0.4
1,484,036 - PS417_06695 0.79 -0.5
1,484,378 - -0.5
1,484,378 - -0.5
1,484,698 + PS417_06700 0.17 +0.1
1,484,880 - PS417_06700 0.39 +0.3
1,485,255 - PS417_06700 0.82 -1.5
1,485,255 - PS417_06700 0.82 +0.5
1,485,278 + +1.8

Or see this region's nucleotide sequence