Strain Fitness in Pseudomonas simiae WCS417 around PS417_28320

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28310 and PS417_28315 overlap by 1 nucleotidesPS417_28315 and PS417_28320 are separated by 11 nucleotidesPS417_28320 and PS417_28325 overlap by 4 nucleotidesPS417_28325 and PS417_28330 overlap by 4 nucleotidesPS417_28330 and PS417_28335 are separated by 3 nucleotides PS417_28310: PS417_28310 - manganese ABC transporter ATP-binding protein, at 6,112,545 to 6,113,216 _28310 PS417_28315: PS417_28315 - zinc ABC transporter permease, at 6,113,216 to 6,114,082 _28315 PS417_28320: PS417_28320 - metal ABC transporter substrate-binding protein, at 6,114,094 to 6,114,972 _28320 PS417_28325: PS417_28325 - phosphoribosyl-AMP cyclohydrolase, at 6,114,969 to 6,115,382 _28325 PS417_28330: PS417_28330 - carbonate dehydratase, at 6,115,379 to 6,115,939 _28330 PS417_28335: PS417_28335 - dihydroorotase, at 6,115,943 to 6,117,280 _28335 Position (kb) 6114 6115Strain fitness (log2 ratio) -1 0 1 2at 6113.162 kb on - strandat 6113.458 kb on - strand, within PS417_28315at 6113.531 kb on + strand, within PS417_28315at 6113.693 kb on + strand, within PS417_28315at 6113.694 kb on - strand, within PS417_28315at 6113.960 kb on + strand, within PS417_28315at 6113.960 kb on + strand, within PS417_28315at 6113.960 kb on + strand, within PS417_28315at 6113.961 kb on - strand, within PS417_28315at 6113.961 kb on - strand, within PS417_28315at 6114.104 kb on + strandat 6114.264 kb on + strand, within PS417_28320at 6114.265 kb on - strand, within PS417_28320at 6114.265 kb on - strand, within PS417_28320at 6114.265 kb on - strand, within PS417_28320at 6114.265 kb on - strand, within PS417_28320at 6114.265 kb on - strand, within PS417_28320at 6114.568 kb on + strand, within PS417_28320at 6114.584 kb on - strand, within PS417_28320at 6114.875 kb on - strand, within PS417_28320at 6114.932 kb on - strandat 6115.106 kb on - strand, within PS417_28325at 6115.330 kb on - strand, within PS417_28325at 6115.330 kb on - strand, within PS417_28325at 6115.790 kb on + strand, within PS417_28330at 6115.790 kb on + strand, within PS417_28330at 6115.790 kb on + strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330at 6115.791 kb on - strand, within PS417_28330

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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6,113,162 - -0.1
6,113,458 - PS417_28315 0.28 +0.1
6,113,531 + PS417_28315 0.36 +1.1
6,113,693 + PS417_28315 0.55 -0.9
6,113,694 - PS417_28315 0.55 +1.4
6,113,960 + PS417_28315 0.86 +1.4
6,113,960 + PS417_28315 0.86 +1.0
6,113,960 + PS417_28315 0.86 -0.5
6,113,961 - PS417_28315 0.86 +1.2
6,113,961 - PS417_28315 0.86 -0.7
6,114,104 + +0.8
6,114,264 + PS417_28320 0.19 +0.1
6,114,265 - PS417_28320 0.19 +0.7
6,114,265 - PS417_28320 0.19 +1.3
6,114,265 - PS417_28320 0.19 +0.9
6,114,265 - PS417_28320 0.19 +0.3
6,114,265 - PS417_28320 0.19 -0.1
6,114,568 + PS417_28320 0.54 +0.3
6,114,584 - PS417_28320 0.56 -0.3
6,114,875 - PS417_28320 0.89 -0.2
6,114,932 - +0.8
6,115,106 - PS417_28325 0.33 +0.8
6,115,330 - PS417_28325 0.87 +0.0
6,115,330 - PS417_28325 0.87 +1.9
6,115,790 + PS417_28330 0.73 +0.3
6,115,790 + PS417_28330 0.73 -0.3
6,115,790 + PS417_28330 0.73 -0.9
6,115,791 - PS417_28330 0.73 -0.2
6,115,791 - PS417_28330 0.73 -0.4
6,115,791 - PS417_28330 0.73 -0.5
6,115,791 - PS417_28330 0.73 -0.1
6,115,791 - PS417_28330 0.73 -1.3
6,115,791 - PS417_28330 0.73 -0.7

Or see this region's nucleotide sequence