Strain Fitness in Pseudomonas simiae WCS417 around PS417_26840

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26830 and PS417_26835 are separated by 29 nucleotidesPS417_26835 and PS417_26840 are separated by 33 nucleotidesPS417_26840 and PS417_26845 are separated by 146 nucleotides PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602 _26830 PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495 _26835 PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200 _26840 PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774 _26845 Position (kb) 5795 5796 5797Strain fitness (log2 ratio) -1 0 1at 5794.552 kb on + strandat 5794.553 kb on - strandat 5794.555 kb on + strandat 5794.555 kb on + strandat 5794.569 kb on + strandat 5794.626 kb on + strandat 5794.627 kb on - strandat 5794.702 kb on + strandat 5794.703 kb on - strandat 5794.703 kb on - strandat 5794.709 kb on + strandat 5794.908 kb on - strand, within PS417_26835at 5795.213 kb on - strand, within PS417_26835at 5795.213 kb on - strand, within PS417_26835at 5795.506 kb on + strandat 5795.530 kb on + strandat 5795.531 kb on - strandat 5795.580 kb on + strandat 5795.581 kb on - strandat 5795.645 kb on - strand, within PS417_26840at 5795.806 kb on + strand, within PS417_26840at 5795.807 kb on - strand, within PS417_26840at 5795.807 kb on - strand, within PS417_26840at 5796.019 kb on + strand, within PS417_26840at 5796.019 kb on + strand, within PS417_26840at 5796.067 kb on + strand, within PS417_26840at 5796.067 kb on + strand, within PS417_26840at 5796.067 kb on + strand, within PS417_26840at 5796.187 kb on - strandat 5796.218 kb on - strandat 5796.218 kb on - strandat 5796.258 kb on - strandat 5796.275 kb on + strandat 5796.275 kb on + strandat 5796.294 kb on - strandat 5796.325 kb on + strandat 5796.325 kb on + strandat 5796.325 kb on + strandat 5796.325 kb on + strandat 5796.325 kb on + strandat 5796.326 kb on - strandat 5796.328 kb on - strandat 5796.366 kb on - strandat 5796.366 kb on - strandat 5796.606 kb on - strand, within PS417_26845at 5796.606 kb on - strand, within PS417_26845at 5796.692 kb on + strand, within PS417_26845at 5796.693 kb on - strand, within PS417_26845at 5796.693 kb on - strand, within PS417_26845at 5796.693 kb on - strand, within PS417_26845at 5797.094 kb on - strand, within PS417_26845at 5797.133 kb on + strand, within PS417_26845at 5797.134 kb on - strand, within PS417_26845

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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5,794,552 + +0.7
5,794,553 - -0.4
5,794,555 + -1.3
5,794,555 + -0.0
5,794,569 + -0.1
5,794,626 + -0.4
5,794,627 - +0.2
5,794,702 + -0.4
5,794,703 - +0.1
5,794,703 - +0.1
5,794,709 + -0.4
5,794,908 - PS417_26835 0.32 -0.6
5,795,213 - PS417_26835 0.67 -0.5
5,795,213 - PS417_26835 0.67 +0.7
5,795,506 + -0.4
5,795,530 + +1.1
5,795,531 - -1.2
5,795,580 + +0.2
5,795,581 - +0.4
5,795,645 - PS417_26840 0.17 +0.6
5,795,806 + PS417_26840 0.41 +1.7
5,795,807 - PS417_26840 0.41 -0.3
5,795,807 - PS417_26840 0.41 -0.6
5,796,019 + PS417_26840 0.73 +0.3
5,796,019 + PS417_26840 0.73 -0.2
5,796,067 + PS417_26840 0.80 +1.3
5,796,067 + PS417_26840 0.80 -0.6
5,796,067 + PS417_26840 0.80 +0.3
5,796,187 - +0.1
5,796,218 - -0.8
5,796,218 - +0.6
5,796,258 - -1.0
5,796,275 + -0.6
5,796,275 + -0.0
5,796,294 - -0.3
5,796,325 + -0.1
5,796,325 + +0.9
5,796,325 + -1.6
5,796,325 + -0.2
5,796,325 + -0.4
5,796,326 - +0.0
5,796,328 - -0.6
5,796,366 - +0.9
5,796,366 - +0.3
5,796,606 - PS417_26845 0.18 +0.0
5,796,606 - PS417_26845 0.18 +0.4
5,796,692 + PS417_26845 0.24 -0.3
5,796,693 - PS417_26845 0.24 +1.3
5,796,693 - PS417_26845 0.24 -0.4
5,796,693 - PS417_26845 0.24 -0.3
5,797,094 - PS417_26845 0.52 +1.0
5,797,133 + PS417_26845 0.55 -0.5
5,797,134 - PS417_26845 0.55 +0.3

Or see this region's nucleotide sequence