Strain Fitness in Pseudomonas simiae WCS417 around PS417_19030

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19025 and PS417_19030 are separated by 95 nucleotidesPS417_19030 and PS417_19035 are separated by 52 nucleotidesPS417_19035 and PS417_19040 are separated by 115 nucleotides PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051 _19025 PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424 _19030 PS417_19035: PS417_19035 - heat-shock protein, at 4,119,477 to 4,119,935 _19035 PS417_19040: PS417_19040 - aspartate racemase, at 4,120,051 to 4,121,502 _19040 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -1 0 1 2 3 4at 4117.161 kb on + strand, within PS417_19025at 4117.161 kb on + strand, within PS417_19025at 4117.161 kb on + strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.390 kb on - strandat 4117.426 kb on + strand, within PS417_19025at 4117.427 kb on - strand, within PS417_19025at 4117.467 kb on + strandat 4117.569 kb on + strand, within PS417_19025at 4117.655 kb on + strand, within PS417_19025at 4117.655 kb on + strand, within PS417_19025at 4117.701 kb on - strand, within PS417_19025at 4117.741 kb on - strand, within PS417_19025at 4117.821 kb on + strand, within PS417_19025at 4117.821 kb on + strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.905 kb on + strand, within PS417_19025at 4118.103 kb on - strandat 4118.147 kb on - strandat 4118.285 kb on - strand, within PS417_19030at 4118.843 kb on + strand, within PS417_19030at 4118.843 kb on + strand, within PS417_19030at 4118.844 kb on - strand, within PS417_19030at 4118.844 kb on - strand, within PS417_19030at 4118.866 kb on - strandat 4119.011 kb on + strand, within PS417_19030at 4119.012 kb on - strand, within PS417_19030at 4119.464 kb on + strandat 4119.926 kb on + strandat 4119.929 kb on + strandat 4119.930 kb on - strandat 4120.003 kb on + strandat 4120.004 kb on - strandat 4120.007 kb on + strandat 4120.065 kb on - strandat 4120.065 kb on - strandat 4120.093 kb on - strandat 4120.185 kb on + strandat 4120.299 kb on - strand, within PS417_19040

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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4,117,161 + PS417_19025 0.26 -1.3
4,117,161 + PS417_19025 0.26 -0.1
4,117,161 + PS417_19025 0.26 +0.1
4,117,162 - PS417_19025 0.26 -0.7
4,117,162 - PS417_19025 0.26 -1.1
4,117,162 - PS417_19025 0.26 +0.1
4,117,162 - PS417_19025 0.26 -0.3
4,117,162 - PS417_19025 0.26 -1.0
4,117,390 - +0.4
4,117,426 + PS417_19025 0.48 -0.1
4,117,427 - PS417_19025 0.48 -0.3
4,117,467 + +1.2
4,117,569 + PS417_19025 0.60 -0.4
4,117,655 + PS417_19025 0.67 -0.6
4,117,655 + PS417_19025 0.67 -0.4
4,117,701 - PS417_19025 0.71 -0.5
4,117,741 - PS417_19025 0.74 +0.8
4,117,821 + PS417_19025 0.81 -0.8
4,117,821 + PS417_19025 0.81 -0.4
4,117,822 - PS417_19025 0.81 -0.8
4,117,822 - PS417_19025 0.81 -0.1
4,117,822 - PS417_19025 0.81 +0.0
4,117,822 - PS417_19025 0.81 -0.2
4,117,905 + PS417_19025 0.88 +0.7
4,118,103 - +0.4
4,118,147 - -0.2
4,118,285 - PS417_19030 0.11 -0.2
4,118,843 + PS417_19030 0.54 -0.0
4,118,843 + PS417_19030 0.54 -0.1
4,118,844 - PS417_19030 0.55 +0.5
4,118,844 - PS417_19030 0.55 +4.2
4,118,866 - +1.3
4,119,011 + PS417_19030 0.68 -0.1
4,119,012 - PS417_19030 0.68 +1.1
4,119,464 + +0.8
4,119,926 + +0.6
4,119,929 + -0.8
4,119,930 - +0.2
4,120,003 + +1.6
4,120,004 - -0.5
4,120,007 + -0.2
4,120,065 - -0.4
4,120,065 - -0.2
4,120,093 - -0.5
4,120,185 + +0.4
4,120,299 - PS417_19040 0.17 -0.8

Or see this region's nucleotide sequence